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AT4G25080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : magnesium-protoporphyrin IX methyltransferase
Curator
Summary (TAIR10)
Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including components of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope.
Computational
Description (TAIR10)
magnesium-protoporphyrin IX methyltransferase (CHLM); FUNCTIONS IN: magnesium protoporphyrin IX methyltransferase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX methyltransferase, C-terminal (InterPro:IPR010940), Magnesium protoporphyrin O-methyltransferase (InterPro:IPR010251); Has 3281 Blast hits to 3281 proteins in 1119 species: Archae - 36; Bacteria - 2263; Metazoa - 32; Fungi - 20; Plants - 76; Viruses - 0; Other Eukaryotes - 854 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G25080-MONOMERBioCyc:ARA:GQT-425-MONOMERBioCyc:ARA:GQT-426-MONOMERBioCyc:ARA:GQT-427-MONOMER
BioCyc:ARA:GQT-428-MONOMERBioCyc:MetaCyc:AT4G25080-MONOMERBioGrid:13898EC:2.1.1.11
eggNOG:COG2227eggNOG:KOG1270EMBL:AK316669EMBL:AK316688
EMBL:AK319071EMBL:AL035523EMBL:AL161562EMBL:AY034948
EMBL:AY062991EMBL:CP002687EnsemblPlants:AT4G25080EnsemblPlants:AT4G25080.1
EnsemblPlants:AT4G25080.2EnsemblPlants:AT4G25080.3EnsemblPlants:AT4G25080.5entrez:828611
Gene3D:3.40.50.150GeneID:828611Genevisible:Q9SW18GO:GO:0009507
GO:GO:0009534GO:GO:0009535GO:GO:0009941GO:GO:0015995
GO:GO:0031969GO:GO:0046406gramene_pathway:2.1.1.11gramene_pathway:CHLOROPHYLL-SYN
hmmpanther:PTHR10108hmmpanther:PTHR10108:SF721HOGENOM:HOG000154343InParanoid:Q9SW18
InterPro:IPR010251InterPro:IPR010940InterPro:IPR029063KEGG:00860+2.1.1.11
KEGG:ath:AT4G25080KO:K03428ncoils:CoilOMA:LDVFIHY
PaxDb:Q9SW18Pfam:PF07109Pfam:Q9SW18Pfscan:PS51556
PhylomeDB:Q9SW18PIR:T05529PRIDE:Q9SW18PRO:PR:Q9SW18
PROSITE:PS51556ProteinModelPortal:Q9SW18Proteomes:UP000006548RefSeq:NP_001119052.1
RefSeq:NP_001190832.1RefSeq:NP_194238.1RefSeq:NP_849438.1RefSeq:NP_849439.1
SMR:Q9SW18STRING:3702.AT4G25080.1SUPFAM:SSF53335TAIR:AT4G25080
tair10-symbols:CHLMTIGRfam:TIGR02021TIGRFAMs:TIGR02021UniGene:At.22023
UniPathway:UPA00668UniProt:Q9SW18
Coordinates (TAIR10) chr4:+:12877015..12878128
Molecular Weight (calculated) 33797.60 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.06
Length 312 amino acids
Sequence (TAIR10)
(BLAST)
001: MPFAPSLLSS SSSVSQFLPR FPNATRFNVT PRSRAATVVA ASVTDLAGVD STTIAVLGGG SVAALAAMVS LTDPERRRKL QAEEVGGGDK EVVREYFNST
101: GFERWRKIYG ETDEVNRVQK DIRLGHAKTV ENTMLMLTED RSLAGVTVCD AGCGTGLLSI PLAKEGAIVS ASDISAAMVA EAEMKAKAQL PSENLPKFEV
201: NDLESLTGKY DTVVCLDVLI HYPQNKADGM IAHLASLAEK RVILSFAPKT FYYDILKRIG ELFPGPSKAT RAYLHSEADV ERALGKVGWK ISKRGLTTTQ
301: FYFSRLIEAV PM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)