AT5G18660.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a protein with 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity. Mutants accumulate divinyl chlorophyll rather than monovinyl chlorophyll. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
PALE-GREEN AND CHLOROPHYLL B REDUCED 2 (PCB2); FUNCTIONS IN: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:6220872..6222125 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 45895.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 417 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSLCSSFNVF ASYSPKPKTI FKDSKFISQF QVKSSPLAST FHTNESSTSL KYKRARLKPI SSLDSGISEI ATSPSFRNKS PKDINVLVVG STGYIGRFVV 101: KEMIKRGFNV IAVAREKSGI RGKNDKEETL KQLQGANVCF SDVTELDVLE KSIENLGFGV DVVVSCLASR NGGIKDSWKI DYEATKNSLV AGKKFGAKHF 201: VLLSAICVQK PLLEFQRAKL KFEAELMDLA EQQDSSFTYS IVRPTAFFKS LGGQVEIVKD GKPYVMFGDG KLCACKPISE QDLAAFIADC VLEENKINQV 301: LPIGGPGKAL TPLEQGEILF KILGREPKFL KVPIEIMDFV IGVLDSIAKI FPSVGEAAEF GKIGRYYAAE SMLILDPETG EYSEEKTPSY GKDTLEDFFA 401: KVIREGMAGQ ELGEQFF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)