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AT1G63820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CCT motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1633 Blast hits to 1633 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1587; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ98eggNOG:ENOG410XYVBEMBL:AK176159EMBL:CP002684
EnsemblPlants:AT1G63820EnsemblPlants:AT1G63820.1entrez:842685GeneID:842685
Gramene:AT1G63820.1hmmpanther:PTHR31319hmmpanther:PTHR31319:SF20HOGENOM:HOG000090374
InterPro:IPR010402KEGG:ath:AT1G63820OMA:HMRRVYSPfam:PF06203
Pfscan:PS51017PhylomeDB:Q67ZF8PROSITE:PS51017Proteomes:UP000006548
RefSeq:NP_176567.2TAIR:AT1G63820UniGene:At.50956UniProt:Q67ZF8
Coordinates (TAIR10) chr1:-:23682529..23684050
Molecular Weight (calculated) 33618.30 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.86
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDLYIFDG SSSSSSICHS TDPDMFSSDT TTTTDLYCNN PYLNPSMDDH QSLSFFESFT PTTHHILSSS PPISQLQTLT LTHTNSFPNF SGFENFDTVK
101: TEQLLFNSPF DAPFMEDSSN FQNQNLLNSP EDSFFSDHMR RVYSTGDLQN LGRDFTGQRS YSSPLAAESS PTTVFSGDEQ SLRVGRYSSE ERKEKISKYR
201: AKRTQRNFTK TIKYACRKTL ADNRPRVRGR FARNDEVFEN PKIASSFTRQ ENDDDLWNLD GLHEEEEACV NLVECQSQSQ PQLQMQYMTN SYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)