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AT4G26430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : COP9 signalosome subunit 6B
Curator
Summary (TAIR10)
one of two genes encoding subunit 6 of COP9 signalosome complex
Computational
Description (TAIR10)
COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14036eggNOG:COG1310eggNOG:KOG3050EMBL:AF395064
EMBL:AF434762EMBL:AL022223EMBL:AL161565EMBL:AY080638
EMBL:AY087556EMBL:BT002345EMBL:CP002687EnsemblPlants:AT4G26430
EnsemblPlants:AT4G26430.1entrez:828749GeneID:828749Genevisible:Q8W1P0
GO:GO:0000338GO:GO:0005737GO:GO:0007275GO:GO:0008180
GO:GO:0009585GO:GO:0010387GO:GO:0010388Gramene:AT4G26430.1
hmmpanther:PTHR10540hmmpanther:PTHR10540:SF8HOGENOM:HOG000253002InParanoid:Q8W1P0
IntAct:Q8W1P0InterPro:IPR000555InterPro:IPR024969KEGG:ath:AT4G26430
KO:K12179OMA:SADNECEPaxDb:Q8W1P0Pfam:PF01398
Pfam:PF13012Pfam:Q8W1P0PhylomeDB:Q8W1P0PIR:T05061
PRIDE:Q8W1P0PRO:PR:Q8W1P0ProteinModelPortal:Q8W1P0Proteomes:UP000006548
Reactome:R-ATH-5696394Reactome:R-ATH-6781823RefSeq:NP_567746.1SMART:SM00232
SMR:Q8W1P0STRING:3702.AT4G26430.1TAIR:AT4G26430tair10-symbols:CSN6B
UniGene:At.26288UniGene:At.28451UniGene:At.75239UniProt:Q8W1P0
Coordinates (TAIR10) chr4:+:13355229..13357326
Molecular Weight (calculated) 35406.40 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.19
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)