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AT1G15250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding ribosomal protein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT3G16080.1); Has 993 Blast hits to 993 proteins in 346 species: Archae - 293; Bacteria - 0; Metazoa - 305; Fungi - 141; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2126eggNOG:KOG3475EMBL:AC007591EMBL:AK118761
EMBL:AY084836EMBL:BT004963EMBL:CP002684EnsemblPlants:AT1G15250
EnsemblPlants:AT1G15250.1entrez:838092Gene3D:2.20.25.30GeneID:838092
Genevisible:Q8LFH7GO:GO:0003735GO:GO:0006412GO:GO:0019843
GO:GO:0022625GO:GO:0046872Gramene:AT1G15250.1hmmpanther:PTHR10768
HOGENOM:HOG000111076InParanoid:Q8LFH7InterPro:IPR001569InterPro:IPR011331
InterPro:IPR011332InterPro:IPR018267KEGG:ath:AT1G15250KO:K02922
OMA:HIQKHECPaxDb:Q8LFH7Pfam:PF01907Pfam:Q8LFH7
PhylomeDB:Q8LFH7PRIDE:Q8LFH7PRO:PR:Q8LFH7ProDom:PD005132
PROSITE:PS01077ProteinModelPortal:Q8LFH7Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_172977.1scanprosite:PS01077SMR:Q8LFH7
STRING:3702.AT1G15250.1SUPFAM:SSF57829TAIR:AT1G15250UniGene:At.41938
UniProt:Q8LFH7
Coordinates (TAIR10) chr1:-:5248825..5249381
Molecular Weight (calculated) 10817.10 Da
IEP (calculated) 12.37
GRAVY (calculated) -1.01
Length 95 amino acids
Sequence (TAIR10)
(BLAST)
1: MGKGTGSFGK RRNKSHTLCV RCGRRSFHIQ KSRCSACAYP AARKRTYNWS VKAIRRKTTG TGRMRYLRNV PRRFKTCFRE GTQATPRNKA AASSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)