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AT2G45710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding ribosomal protein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, nucleolus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: ribosomal protein S27 (TAIR:AT3G61110.1); Has 1004 Blast hits to 1004 proteins in 364 species: Archae - 106; Bacteria - 0; Metazoa - 449; Fungi - 151; Plants - 149; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2051eggNOG:KOG1779EMBL:AC003680EMBL:AC004665
EMBL:AY072376EMBL:AY085824EMBL:BT000089EMBL:CP002685
EnsemblPlants:AT2G45710EnsemblPlants:AT2G45710.1entrez:819179ExpressionAtlas:O64650
Gene3D:2.20.25.100GeneID:819179Genevisible:O64650GO:GO:0003735
GO:GO:0005730GO:GO:0005829GO:GO:0005886GO:GO:0006412
GO:GO:0009506GO:GO:0022626GO:GO:0022627GO:GO:0046872
Gramene:AT2G45710.1HAMAP:MF_00371hmmpanther:PTHR11594HOGENOM:HOG000224977
InParanoid:O64650InterPro:IPR000592InterPro:IPR011332InterPro:IPR023407
iPTMnet:O64650KEGG:ath:AT2G45710KO:K02978OMA:EGCSFRV
PANTHER:PTHR11594PaxDb:O64650Pfam:O64650Pfam:PF01667
PhylomeDB:O64650PIR:T00884PRIDE:O64650PRO:PR:O64650
ProDom:PD004466PROSITE:PS01168ProteinModelPortal:O64650Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_182095.1scanprosite:PS01168SMR:O64650STRING:3702.AT2G45710.1
SUPFAM:SSF57829TAIR:AT2G45710UniGene:At.36603UniProt:O64650
UniProt:Q0WS09
Coordinates (TAIR10) chr2:+:18831243..18831999
Molecular Weight (calculated) 9405.61 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.26
Length 84 amino acids
Sequence (TAIR10)
(BLAST)
1: MVLQNDIDLL NPPAELEKRK HKLKRLVQSP NSFFMDVKCQ GCFNITTVFS HSQTVVMCGN CQTLLCTPTG GKAKLTEGCS FRKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)