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AT1G61570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23750852 (2013): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21472856 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
  • PMID:14730085 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : translocase of the inner mitochondrial membrane 13
Curator
Summary (TAIR10)
Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.
Computational
Description (TAIR10)
translocase of the inner mitochondrial membrane 13 (TIM13); FUNCTIONS IN: copper ion binding, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein import into mitochondrial inner membrane, protein targeting to mitochondrion; LOCATED IN: mitochondrion, mitochondrial inner membrane, mitochondrial intermembrane space; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like (InterPro:IPR004217); Has 603 Blast hits to 603 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 319; Fungi - 124; Plants - 140; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41124YIeggNOG:KOG1733EMBL:AC005850EMBL:AF144703
EMBL:AF368255EMBL:AY086079EMBL:AY136299EMBL:BT003431
EMBL:CP002684EnsemblPlants:AT1G61570EnsemblPlants:AT1G61570.1entrez:842453
Gene3D:1.10.287.810GeneID:842453Genevisible:Q9XH48GO:GO:0005507
GO:GO:0005739GO:GO:0005758GO:GO:0015031Gramene:AT1G61570.1
hmmpanther:PTHR19338HOGENOM:HOG000115759InParanoid:Q9XH48InterPro:IPR004217
KEGG:ath:AT1G61570KO:K17781OMA:GGESSCIPaxDb:Q9XH48
Pfam:PF02953Pfam:Q9XH48PhylomeDB:Q9XH48PIR:A96641
PRIDE:Q9XH48PRO:PR:Q9XH48ProteinModelPortal:Q9XH48Proteomes:UP000006548
RefSeq:NP_564780.1SMR:Q9XH48STRING:3702.AT1G61570.1SUPFAM:SSF144122
TAIR:AT1G61570tair10-symbols:TIM13UniGene:At.11095UniProt:Q9XH48
Coordinates (TAIR10) chr1:-:22718897..22719473
Molecular Weight (calculated) 9412.21 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.24
Length 87 amino acids
Sequence (TAIR10)
(BLAST)
1: MDSYSSPPMG GSGSSVSPEV MMESVKTQLA QAYAEELIET LRTKCFDKCV TKPGSSLGGS ESSCISRCVE RYMEATAIIS RSLFTQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)