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AT3G06680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal L29e protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal L29e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: Ribosomal L29e protein family (TAIR:AT3G06700.3); Has 760 Blast hits to 760 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 97; Plants - 113; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4112428eggNOG:KOG3504EMBL:CP002686EnsemblPlants:AT3G06680
EnsemblPlants:AT3G06680.1entrez:819853ExpressionAtlas:F4JC32GeneID:819853
GO:GO:0003735GO:GO:0006412GO:GO:0022625Gramene:AT3G06680.1
hmmpanther:PTHR12884InterPro:IPR002673OMA:CCAVVTEPANTHER:PTHR12884
PaxDb:F4JC32Pfam:PF01779PRIDE:F4JC32ProDom:PD010314
ProteinModelPortal:F4JC32Proteomes:UP000006548RefSeq:NP_187324.2SMR:F4JC32
STRING:3702.AT3G06680.1TAIR:AT3G06680UniGene:At.40479UniProt:F4JC32
Coordinates (TAIR10) chr3:-:2114402..2114877
Molecular Weight (calculated) 9389.34 Da
IEP (calculated) 11.26
GRAVY (calculated) -0.97
Length 83 amino acids
Sequence (TAIR10)
(BLAST)
1: MSPIFPLASL PFTQLCCAVV TEMAKSKNHT AHNQSAKAHK NGIKKPRRHR HTPTRGMDPK FLRNQRYARK HNVKSGENAG VEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)