suba logo
AT1G22270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Trm112p-like protein
Curator
Summary (TAIR10)
Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth.
Computational
Description (TAIR10)
Trm112p-like protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: Trm112p-like protein (TAIR:AT1G78190.1); Has 419 Blast hits to 419 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 151; Fungi - 129; Plants - 62; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
DNASU:838833eggNOG:ENOG4111NTJeggNOG:KOG1088EMBL:AK175143
EMBL:AK175653EMBL:AK175662EMBL:AK175824EMBL:AK176229
EMBL:AK176275EMBL:AK227723EnsemblPlants:AT1G22270EnsemblPlants:AT1G22270.1
entrez:838833ExpressionAtlas:Q681G4GeneID:838833Gramene:AT1G22270.1
hmmpanther:PTHR12773hmmpanther:PTHR12773:SF0InterPro:IPR005651KEGG:ath:AT1G22270
KO:K15448OMA:EEGAMVCPfam:PF03966Pfam:Q8LFJ5
PhylomeDB:Q681G4RefSeq:NP_564163.1SMR:Q681G4STRING:3702.AT1G22270.1
SUPFAM:SSF158997TAIR:AT1G22270UniGene:At.22923UniProt:Q681G4
UniProt:Q8LFJ5
Coordinates (TAIR10) chr1:+:7865548..7865922
Molecular Weight (calculated) 13962.00 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.18
Length 124 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLITHNMLS CNIKGVTSGF PLRIEAGNVI EKEVDFNPDF IRHMFAKIEW KALVEGARSM GYAELPEESP DAAVLKSDEP FLKKLHHALL ELHLEEGALV
101: CPETGRKFPV NKGIPNMLLH EDEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)