AT1G22270.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Trm112p-like protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth. | ||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Trm112p-like protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: Trm112p-like protein (TAIR:AT1G78190.1); Has 419 Blast hits to 419 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 151; Fungi - 129; Plants - 62; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:7865548..7865922 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 13962.00 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||
Length | 124 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRLITHNMLS CNIKGVTSGF PLRIEAGNVI EKEVDFNPDF IRHMFAKIEW KALVEGARSM GYAELPEESP DAAVLKSDEP FLKKLHHALL ELHLEEGALV 101: CPETGRKFPV NKGIPNMLLH EDEV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)