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AT3G58930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.896
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58940.1); Has 1839 Blast hits to 1799 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1839; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:10377eggNOG:ENOG410JBX1eggNOG:ENOG410ZC2NEMBL:AK117999
EMBL:AL353032EMBL:BT005389EMBL:CP002686EnsemblPlants:AT3G58930
EnsemblPlants:AT3G58930.1entrez:825062Gene3D:3.80.10.10GeneID:825062
Gramene:AT3G58930.1hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6HOGENOM:HOG000015201
InParanoid:Q8GXW6IntAct:Q8GXW6InterPro:IPR001810InterPro:IPR006566
InterPro:IPR032675KEGG:ath:AT3G58930OMA:RMASMEWPaxDb:Q8GXW6
Pfam:PF00646Pfam:PF08387Pfam:Q8GXW6PhylomeDB:Q8GXW6
PIR:T49176PRIDE:Q8GXW6PRO:PR:Q8GXW6ProteinModelPortal:Q8GXW6
Proteomes:UP000006548RefSeq:NP_191452.2SMART:SM00579SMR:Q8GXW6
STRING:3702.AT3G58930.1SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT3G58930
UniProt:Q8GXW6
Coordinates (TAIR10) chr3:-:21778381..21780014
Molecular Weight (calculated) 55196.70 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.18
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRVSNLPDG VRGHILSFLP AKHIALTSVL SKSWLNLWKL IPILDIDDSE FLHPEEGKAE RLEIRQSFVD FVDRVLALQD DSPIDRFSLK CITGIHPDHV
101: NRWICNVLQR GVSDLDLFID FSYEDTQEDE DMLPQEMFVS KTLVKLKIRN DRCVDWWCGK GGTSLPMLKS LYIDSDLILW GKMKRFLSSF PVLEELRMAS
201: MEWKESHETV SSASLRKLSI LGTGCEDYVN PKSISFDTPS LLYLNYSDLV AEDYPLVNMG KLLEARINLI VKDDQIKRVR EPNNDLLQDD AGNVVLQFGN
301: VVKLMNGIQN IQILYLTADT LEVLSLCCES MPVFNNLKTL GIKSEEGRGW QAVPALLRNC PHLEYLIIEG LLHNVTDKCG DACDCISRED KGRSLASCPV
401: KKVEIQGFRG TMREINMIGH FLRSFKCLKE MGIFPEEEGP TNFENPGAFE YVEKILKLYN EISNCDVYFL VWGYMRRKWT TQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)