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AT3G60880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dihydrodipicolinate synthase 1
Curator
Summary (TAIR10)
Encodes a dihydropicolinate synthase involved in lysine biosynthesis. The enzyme is allosterically inhibited by lysine. It is predicted to localize to the cholorplast.
Computational
Description (TAIR10)
dihydrodipicolinate synthase 1 (DHDPS1); FUNCTIONS IN: dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Dihydrodipicolinate synthetase (InterPro:IPR002220), Dihydrodipicolinate synthetase, active site (InterPro:IPR020625), Dihydrodipicolinate synthetase, conserved site (InterPro:IPR020624); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate synthase (TAIR:AT2G45440.1); Has 13092 Blast hits to 13092 proteins in 2641 species: Archae - 342; Bacteria - 9390; Metazoa - 97; Fungi - 273; Plants - 96; Viruses - 0; Other Eukaryotes - 2894 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G60880EnsemblPlants:AT3G60880.1entrez:825259gramene_pathway:4.2.1.52
gramene_pathway:4.4.1.5gramene_pathway:PWY-5097gramene_pathway:PWY-5386gramene_plant_reactome:1119273
gramene_plant_reactome:1119419gramene_plant_reactome:6876840gramene_plant_reactome:6877375KEGG:00261+4.3.3.7
KEGG:00300+4.3.3.7Pfam:PF00701scanprosite:PS00665scanprosite:PS00666
SUPFAM:SSF51569tair10-symbols:DHDPStair10-symbols:DHDPS1TIGRfam:TIGR00674
unipathway:UPA00034
Coordinates (TAIR10) chr3:+:22495086..22496542
Molecular Weight (calculated) 40466.70 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.23
Length 364 amino acids
Sequence (TAIR10)
(BLAST)
001: MSALKNYGLI SIDSALHFPR SNQLQSYKRN AKWVSPIAAV VPNFHLPMRS LEDKNRTNTD DIRSLRVITA IKTPYLPDGR FDLQAYDDLV NTQIENGAEG
101: VIVGGTTGEG QLMSWDEHIM LIGHTVNCFG GRIKVIGNTG SNSTREAIHA TEQGFAMGMH GALHINPYYG KTSIEGMNAH FQTVLHMGPT IIYNVPGRTC
201: QDIPPQVIFK LSQNPNMAGV KECVGNNRVE EYTEKGIVVW SGNDDQCHDS RWDHGATGVI SVTSNLVPGL MRKLMFEGRN SALNAKLLPL MDWLFQEPNP
301: IGVNTALAQL GVARPVFRLP YVPLPLSKRI EFVKLVKEIG REHFVGDRDV QVLDDDDFIL IGRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)