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AT4G12460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.959
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 2B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 2B (ORP2B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2A (TAIR:AT4G22540.1); Has 2708 Blast hits to 2476 proteins in 219 species: Archae - 0; Bacteria - 2; Metazoa - 1436; Fungi - 690; Plants - 296; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink).
Protein Annotations
BioGrid:12156eggNOG:ENOG410XP9EeggNOG:KOG1737EMBL:AL049730
EMBL:AL161534EMBL:AY140023EMBL:BT008852EMBL:CP002687
EnsemblPlants:AT4G12460EnsemblPlants:AT4G12460.1entrez:826858Gene3D:2.30.29.30
GeneID:826858Genevisible:Q9SU36GO:GO:0006869GO:GO:0008289
hmmpanther:PTHR10972hmmpanther:PTHR10972:SF88HOGENOM:HOG000231234InParanoid:Q9SU36
IntAct:Q9SU36InterPro:IPR000648InterPro:IPR001849InterPro:IPR011993
iPTMnet:Q9SU36KEGG:ath:AT4G12460ncoils:CoilOMA:QLEMANL
PANTHER:PTHR10972PaxDb:Q9SU36Pfam:PF01237Pfam:PF15413
Pfam:Q9SU36Pfscan:PS50003PhylomeDB:Q9SU36PIR:T07638
PRIDE:Q9SU36PRO:PR:Q9SU36PROSITE:PS50003ProteinModelPortal:Q9SU36
Proteomes:UP000006548RefSeq:NP_001078376.1RefSeq:NP_192983.2SMART:SM00233
SMR:Q9SU36STRING:3702.AT4G12460.1SUPFAM:0051579SUPFAM:SSF50729
TAIR:AT4G12460tair10-symbols:ORP2BUniGene:At.33471UniProt:Q9SU36
Coordinates (TAIR10) chr4:+:7391400..7396056
Molecular Weight (calculated) 79569.80 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.70
Length 693 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLTRSKSLP ATENGGSDRE TLQSGRSVAG ILYKWTNYGK GWRSRWFLLR DGILSYSKIR RPENVNLLSP SDDLRLIGDI STDRLLRMKS CSGRSRRKHH
101: KNIGIVHLKV SSYRESKSDH RKFYIFTATK TLHLRTDSRS DRAAWLQALA STRGIVPLQS INGDFSFVSP KDLSISTERL KKRLFEEGMN ESLVKECEQI
201: VDSEFCEVQE QIKLLHEERK KLLDALRQLE MANLEAEASG IHDDVYQLRN HKYSSLGRGK YSECSTSASS DDKQEFEDIS EEDEASFHDT KESFGEPDVG
301: SVLTHFKRRT KLPDPAEKER GVSLWSMIKD NVGKDLTRVC LPVYFNEPIS SLQKCFEDLE YSYLLDQAYE YGKSGKSLLR ALNVAAFAVS GYASTEGRHC
401: KPFNPLLGET YEADFPEKGI RFFSEKVSHH PTVIACHCEG KGWKFWGDTN LRSKFWGRSI QLEPVGILTL EFDDGEIFQW SKVTTTIYNI LLGKLYCDHH
501: GIMKIRGNRQ YSCMLKFKEQ SILDRNPHQV NGFVEDVTGK KAATVFGKWN DSLYYVAGDG INKASASLLW KATKAPPNVT RYNFTSFAMT LNELIPGLEE
601: KLPPTDSRLR PDQRHLENGE YEKANEEKQR LERRQRMSRQ IQESGWRPRW FEPQGESESY KYTGGYWEAR DVKSWDDCPN IFGEFTEEVA DCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)