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AT1G21730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.907
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G06670.1); Has 16169 Blast hits to 14119 proteins in 580 species: Archae - 38; Bacteria - 464; Metazoa - 7403; Fungi - 1809; Plants - 2013; Viruses - 19; Other Eukaryotes - 4423 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2813-MONOMEReggNOG:COG5059eggNOG:KOG0242EMBL:AB062738
EMBL:CP002684EnsemblPlants:AT1G21730EnsemblPlants:AT1G21730.1entrez:838777
Gene3D:3.40.850.10GeneID:838777GO:GO:0003777GO:GO:0005524
GO:GO:0005874GO:GO:0005886GO:GO:0007018Gramene:AT1G21730.1
hmmpanther:PTHR24115hmmpanther:PTHR24115:SF487HOGENOM:HOG000243536InterPro:IPR001752
InterPro:IPR019821InterPro:IPR027417InterPro:IPR027640KEGG:ath:AT1G21730
KO:K11498ncoils:CoilOMA:SMTRKGDPANTHER:PTHR24115
Pfam:PF00225Pfscan:PS50067PhylomeDB:Q8W5R6PRINTS:PR00380
PROSITE:PS00411PROSITE:PS50067Proteomes:UP000006548RefSeq:NP_173592.3
scanprosite:PS00411SMART:SM00129SMR:Q8W5R6STRING:3702.AT1G21730.1
SUPFAM:SSF52540TAIR:AT1G21730UniGene:At.41644UniProt:Q8W5R6
Coordinates (TAIR10) chr1:+:7630365..7636247
Molecular Weight (calculated) 98462.00 Da
IEP (calculated) 6.53
GRAVY (calculated) -0.62
Length 890 amino acids
Sequence (TAIR10)
(BLAST)
001: MSATRSQRSS TISPARPRRS PATIPMKRPE TPSSSHFSAS PVTSSSPLLR SSPSPSTSSA AASSTAVAST KLKENITVTI RFRPLSPREV NNGDEIAWYA
101: DGDYTIRNEY NPSLCYGFDR VFGPPTTTRR VYDIAAQQVV SGAMSGINGT VFAYGVTSSG KTHTMHGEQR SPGIIPLAVK DVFSIIQETP EREFLLRVSY
201: LEIYNEVIND LLDPTGQNLR IREDSQGTYV EGIKDEVVLS PAHALSLIAS GEEHRHVGSN NVNLFSSRSH TMFTLTIESS PHGKGDDGED VSLSQLHLID
301: LAGSESSKTE ITGQRRKEGS SINKSLLTLG TVISKLTDTK AAHIPYRDSK LTRLLQSTLS GHGRVSLICT ITPASSTSEE THNTLKFAQR CKHVEIKASR
401: NKIMDEKSLI KKYQKEISCL QEELTQLRHG NQDDLADRKL QVKLQSRLED DEEAKAALMG RIQRLTKLIL VSTKSSLQAA SVKPDHIWRQ AFGEDELAYL
501: PDRRRENMAD DGAVSTVSEH LKEPRDGNSS LDEMTKDRRK NKTRGMLGWL KLKKSDGVAG TLPTDGNQSQ ASGSPSSSSK YTQTKTTRRE NAAAIKSIPE
601: KTVAGDLFSA TVGPEDSSPT GTTIADQMDL LHEQTKILVG EVALRTSSLN RLSEQAARNP EDFHIRDQIQ KLEDEISEKK DQIRVLEQQI IEIFGMTPYA
701: SDSLGMPQVL SKLTMQLNEK IFEHEIKSAD NRILQEQLQM TKSENAEMQE TIILLRQQLD SLAERQSTQQ IAGDESSGKN IHNRNGEESE IYSGAGTPTS
801: VMSLNRVFAQ EETKEIYNET ALNSQALEIE NLKKEKMRLI EEKDELGKLN KKLTEEASYA KELASAAAVE LQNLAEEVTR LCNENAKLSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)