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AT2G25350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.967
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phox (PX) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phox (PX) domain-containing protein; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: Phox (PX) domain-containing protein (TAIR:AT4G32160.1); Has 23905 Blast hits to 15623 proteins in 1176 species: Archae - 308; Bacteria - 2272; Metazoa - 12562; Fungi - 2077; Plants - 1184; Viruses - 165; Other Eukaryotes - 5337 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK2NeggNOG:ENOG4110T18EMBL:AC007070EMBL:CP002685
EnsemblPlants:AT2G25350EnsemblPlants:AT2G25350.1entrez:817073Gene3D:3.30.1520.10
GeneID:817073GO:GO:0035091Gramene:AT2G25350.1hmmpanther:PTHR10555
hmmpanther:PTHR10555:SF156HOGENOM:HOG000084131InterPro:IPR001683KEGG:ath:AT2G25350
ncoils:CoilOMA:ISGQSDQPfam:PF00787Pfscan:PS50195
PhylomeDB:Q8S8D3PROSITE:PS50195Proteomes:UP000006548RefSeq:NP_565591.1
SMART:SM00312SUPFAM:SSF64268TAIR:AT2G25350UniGene:At.52907
UniProt:Q8S8D3
Coordinates (TAIR10) chr2:+:10797599..10800756
Molecular Weight (calculated) 72827.50 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.69
Length 643 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRRSPPKHR HDGASPLPLG MDWSPPPRNW NGRDTIWPHD FRTGWSYCVT IPSWTLLSKS KNSDPIVFYR VQVSVQSPEG VSTMRGILRR FNDFVKLLAD
101: LKRAFPRKSF PSAPPKGFLR VKSRDMLEER RCSLEDWMTK LLSDIELARS VVVASFLELE ATARSACQVV DQNASDSNDD GNSTSLSSLV HPNSGGSSLL
201: SSDYGSDTAY ETSELGSASL GQDDVSETDT GDLTLDEDLT NPTEKLVKFS MSNIDEGLSM SQTIIEQLED FPKHRVHLGY ANDITETNSY NGKASKGVFR
301: ANNDLRCRSE SETSHSVMHD RKLSLESADG VSLLAGETST SSILSSIVHS QLDVNHDISV GNLEIPGNGR IVLPLKMHSK LNRILLTMNE RLLNSKTDME
401: DLIARLNQET AVKEYLNRKV DDLEVELETT KQRNKENLEQ ALMTERQSVT KMQWDMEELR QKTFEMELKL KSKEDGSSDS KTSGNSTISE SHELLQEMDA
501: TKQQLEDLSR RYVELEAKSK ADIKVLVREV KSLRRSHMEM EKELTRSLTE KSDTEKLLQQ ERIIVENTLE ARRRLYSDCE ILHDRLKVNN TNLSMDESSN
601: NREDLSEVSN ALQDQIEAQL LLGFDETASE DELRKIMADM YED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)