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AT2G43210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.707
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); Has 1416 Blast hits to 1005 proteins in 245 species: Archae - 0; Bacteria - 142; Metazoa - 386; Fungi - 259; Plants - 165; Viruses - 17; Other Eukaryotes - 447 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZR21eggNOG:KOG2507EMBL:AC004450EMBL:AC006224
EMBL:AK316805EMBL:AY084884EMBL:AY091770EMBL:BT002277
EMBL:CP002685EnsemblPlants:AT2G43210EnsemblPlants:AT2G43210.1EnsemblPlants:AT2G43210.2
entrez:818922GeneID:818922Genevisible:Q9ZW74Gramene:AT2G43210.1
Gramene:AT2G43210.2hmmpanther:PTHR13020hmmpanther:PTHR13020:SF36InterPro:IPR001012
InterPro:IPR012336InterPro:IPR029071iPTMnet:Q9ZW74KEGG:ath:AT2G43210
OMA:AEVIGNCPaxDb:Q9ZW74Pfam:PF00789Pfam:Q9ZW74
Pfscan:PS50033PhylomeDB:Q9ZW74PIR:D84863PRIDE:Q9ZW74
PRO:PR:Q9ZW74PROSITE:PS50033ProteinModelPortal:Q9ZW74Proteomes:UP000006548
RefSeq:NP_850390.1RefSeq:NP_850391.1SMART:SM00166STRING:3702.AT2G43210.1
SUPFAM:SSF52833SUPFAM:SSF54236TAIR:AT2G43210UniGene:At.43847
UniProt:Q9ZW74
Coordinates (TAIR10) chr2:+:17960942..17963560
Molecular Weight (calculated) 57101.60 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.63
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALSSLTFK GSLPEAIFEA KGKKKLFVVY ISGEDEESDK LNRLTWTDAS VADSLSKYCI LVHIQAGSVD ATNFSAIYPY SSVPCIAAIG FSGTQVWRTE
101: GFITAEDLAS SLEKAWLGLH IQETTASIFS AALASQNSET PVSSASSVVL PPGSVPLDAA VASPSTASSV QPSETKSTVT SASTTENNDG TVAVKGKESA
201: EPSNLCDTTK NQPAPSVDGT KANVEHEATE TPLRVQAEKE PIRPTAPGTN DNTSRVRSSV DRKRKQGTVI NEEDSGVGVS GRDINLTKSV DTKETMKPKD
301: EGGEEEDGEK SKKASDVHLN IRLPDGSSLQ EKFSVTSILR MVKDYVNSNQ TIGLGAYDLA VPYPRKVYTD QDLDKSLSEL RLFDRQALVV VPRKRATVYQ
401: RGTSYSESNN NTDPNSGGYF AYVRRVLSYA NPFSYFGGGT ANASSSVPER QTRPNTEVRN NLGQVGTSFQ DPSEGRSNVR NRRPTTSRIG SNIHTLNHNE
501: DEAPFGDGNA FWNGNSTQYG GGSGGDSNDR R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)