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AT2G47430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Signal transduction histidine kinase
Curator
Summary (TAIR10)
Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte.
Computational
Description (TAIR10)
CYTOKININ-INDEPENDENT 1 (CKI1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 1 (TAIR:AT2G17820.1); Has 89821 Blast hits to 76986 proteins in 2917 species: Archae - 765; Bacteria - 78909; Metazoa - 25; Fungi - 2111; Plants - 1771; Viruses - 21; Other Eukaryotes - 6219 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G47430-MONOMERBioGrid:4691EC:2.7.13.3eggNOG:ENOG410IRDA
eggNOG:ENOG410XT1KEMBL:AC002535EMBL:CP002685EMBL:D87545
EMBL:EF598269EMBL:EF598270EMBL:EF598271EMBL:EF598272
EMBL:EF598273EMBL:EF598274EMBL:EF598275EMBL:EF598276
EMBL:EF598277EMBL:EF598278EMBL:EF598279EMBL:EF598280
EMBL:EF598281EMBL:EF598282EMBL:EF598283EMBL:EF598284
EMBL:EF598285EMBL:EF598286EMBL:EF598287EMBL:EF598288
EMBL:EF598289EMBL:EF598290EMBL:EF598291EnsemblPlants:AT2G47430
EnsemblPlants:AT2G47430.1entrez:819356Gene3D:1.10.287.130Gene3D:3.30.565.10
GeneID:819356Genevisible:O22267GO:GO:0000155GO:GO:0004673
GO:GO:0005622GO:GO:0005886GO:GO:0009506GO:GO:0009553
GO:GO:0009736GO:GO:0010087GO:GO:0016021GO:GO:0018106
GO:GO:0042803GO:GO:0080117Gramene:AT2G47430.1hmmpanther:PTHR24423
hmmpanther:PTHR24423:SF514HOGENOM:HOG000114067InParanoid:O22267IntAct:O22267
InterPro:IPR001789InterPro:IPR003594InterPro:IPR003661InterPro:IPR004358
InterPro:IPR005467InterPro:IPR011006KEGG:ath:AT2G47430OMA:MDMINIV
PaxDb:O22267PDB:3MM4PDB:3MMNPDBsum:3MM4
PDBsum:3MMNPfam:O22267Pfam:PF00072Pfam:PF00512
Pfam:PF02518Pfscan:PS50109Pfscan:PS50110PhylomeDB:O22267
PIR:T00441PRIDE:O22267PRINTS:PR00344PRO:PR:O22267
PROSITE:PS50109PROSITE:PS50110ProteinModelPortal:O22267Proteomes:UP000006548
RefSeq:NP_182265.1SMART:SM00387SMART:SM00388SMART:SM00448
SMR:O22267STRING:3702.AT2G47430.1SUPFAM:SSF47384SUPFAM:SSF52172
SUPFAM:SSF55874TAIR:AT2G47430tair10-symbols:CKI1TMHMM:TMhelix
UniGene:At.341UniProt:O22267
Coordinates (TAIR10) chr2:-:19459167..19463122
Molecular Weight (calculated) 125040.00 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.26
Length 1122 amino acids
Sequence (TAIR10)
(BLAST)
0001: MMVKVTKLVA SRPIVVFCVL AFLVVVFECI WISNWRTTTE NLVKEVASFT EDLRTSLVSE IENIGKFTYA KTNLSTIGLA RVIDSYITNN DTGFTEIQTQ
0101: IAPLLFVAYS TILQVSQVSY ISRDGLMFSY IAESNTSVAV FANSSSNSSR GDYTWYTQTV DQLTGRLNGN STKSQSLDVT HTDWFQAAQS NNYTTAFVGT
0201: SLGGEDNETL IQSVVSLYSK KGLVSLGFPV KTLTEVLNSL NLHGEELYMW TKDGTVLVRE GSLNDSFFIS NGSICFGRES NSLWSQCIPE NCSSSGYEVE
0301: IKRLRYQAFC SVIEVSGVPL RYTLMFPNKG GATRIKHQAE KAKYQLIVVM IFLGFGWPVW FVWFMMQATR REMHMRATLI NQMEATQQAE RKSMNKSQAF
0401: ANASHDIRGA LAGMKGLIDI CRDGVKPGSD VDTTLNQVNV CAKDLVALLN SVLDMSKIES GKMQLVEEDF NLSKLLEDVI DFYHPVAMKK GVDVVLDPHD
0501: GSVFKFSNVR GDSGRLKQIL NNLVSNAVKF TVDGHIAVRA WAQRPGSNSS VVLASYPKGV SKFVKSMFCK NKEESSTYET EISNSIRNNA NTMEFVFEVD
0601: DTGKGIPMEM RKSVFENYVQ VRETAQGHQG TGLGLGIVQS LVRLMGGEIR ITDKAMGEKG TCFQFNVLLT TLESPPVSDM KVRQEIEAGG DYVSTPNLGL
0701: TINTSLGGSM NIRNLSPRFN NCLSSSPKQE GSRVVLLLKN EERRRVTEKY IKNLGIKVTV VEKWEHLSYA LERLFGFSPQ SSMGRAECSL SCPSSRELPF
0801: IGMDGIDSRS QLPKRRSISF SAVVLLVIDA KTGPFFELCD IVKQFRRGLP HGISCKVVWL NESSTRVSER GDISCSRPLH GSRLMEVLKM LPEFGGTVLK
0901: EPPTELQRES LLRHSFVAER SPKHKVQEEG PSSMFNKKLG KRIMASTDSE SETRVKSVRT GRKPIGNPED EQETSKPSDD EFLRGKRVLV VDDNFISRKV
1001: ATGKLKKMGV SEVEQCDSGK EALRLVTEGL TQREEQGSVD KLPFDYIFMD CQMPEMDGYE ATREIRKVEK SYGVRTPIIA VSGHDPGSEE ARETIQAGMD
1101: AFLDKSLNQL ANVIREIESK RH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)