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AT1G79190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 200 Blast hits to 184 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 76; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSN6eggNOG:KOG4524EMBL:CP002684EnsemblPlants:AT1G79190
EnsemblPlants:AT1G79190.1entrez:844260Gene3D:1.25.10.10GeneID:844260
Gramene:AT1G79190.1hmmpanther:PTHR18460InParanoid:F4IDJ4InterPro:IPR011989
InterPro:IPR016024iPTMnet:F4IDJ4KEGG:ath:AT1G79190ncoils:Coil
OMA:QFSGSMDPaxDb:F4IDJ4PRIDE:F4IDJ4ProteinModelPortal:F4IDJ4
Proteomes:UP000006548RefSeq:NP_178040.5STRING:3702.AT1G79190.1SUPFAM:SSF48371
TAIR:AT1G79190UniGene:At.46523UniProt:F4IDJ4
Coordinates (TAIR10) chr1:+:29788639..29794116
Molecular Weight (calculated) 148207.00 Da
IEP (calculated) 6.38
GRAVY (calculated) -0.04
Length 1335 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDKSVVIRRE TNGDDVEGDP EREAVFAQLK VLCLELLNLS QNPEKDPTTI PALLLLLRRT PPSSLQSFFH YTLFPLLLLL DAAVACRSQG QNKPEEFPQT
0101: PYRVSDKVAE GVISCLEELL KKCHIGSIDQ MVVIMKKLTS GAVLSPSEAS EEFREGIVKC FRAMISGLLP CSDDSCSCKR TVGWPQLSDR RDYQTQVSES
0201: YKYDFETREC LLAFLQSQSA LAAVGHWLSI LLKVADAEAS RGHRGSANLR VEAFMALRIL VAKIGTADVL AFFLPGVVSQ VFKVLHVSRA MISGAAGSVD
0301: ALDQAIRGLA EFLMIVLEDE ANSSALEISN GDTKSQKHES AHSILDELRS LTTKSQGQSD ELTEITNQEI VNINVPEKSN LNLSRDSFLV ERTKKWLDST
0401: TSHVNKLLCE TFPHILIHPA GKIRWGFLAA IRGLLSKSSC SLKGARLVML ECVCTLAVDD SDEVSVAAQE FLDHLFSEST KNHVESDIKK IFSRLLERLP
0501: KVVLGNEELP ALSVVKQLLV ITYYSGPQFL ADHLQSPITA SRFLDIFSLC LSHNSAFTGS LEKLIAERPS SSTGYLPSIT ELKVGFRETR YNRAVPNITE
0601: TDQVKLEISS PSSHMLPRMP PWFSYVGSQK LYEMLAGILR LVGLSLMAGF KNEGHLAVIL DIPLGFVRKL VSEVRVKEYN GEDWQSWCNR TGSGQLVRQA
0701: ATAACILNEM IFGLSDQATD ALSRLLQKSR KGRDKLSWEI SWNKRAKTNL IECVGKILHE YQASEVWDLP VDQKAILGQT DNDGQHISLH FLRDSAMLHQ
0801: VIIEGVGVFS LCLGKDFASS GFLHSSLYLL LESLTCSSFQ VRNASDTVLR LLAATSGHPT VGHLVVANAD YVIDSICRQL RHLDLNPHVP NVLAAMLSYI
0901: GVAHDILPLL EEPMRLVSQE LEIVGRQQHP NLTIPFLKAV GEIVNASKNE ACLLPDRAKS YSDHVKTKAT DAITSRQERV SNSDKIVEDE EEWENILLEL
1001: NRSKRYRRTV GSIASSCLIA ATPLLASSNQ VSCLVSLEII EEGVVALAKV EEAYRAETET KETIEEVIEF ASFYQLKDYM NASDDGADEN RLLPAINKIW
1101: PFCVACIRNR NPVAVRRCLV VITRIIQTSG GDFFSRRFRN DGPDFWKLLT TSPFHIMTPK ILREDNKSVL RLPYRTISES SSSTIAEVSS LKVQAAVLDM
1201: IAEISRGKRS ASALDAVLKK VAGLVVGIAY SSVTGLREAA LNALRGLACI DPDLIWILLA DVYYSLKKKD LPLPPSPEFP DISNVLPSRP PEDSRTKFLY
1301: VEYGGRSYGF ELEFSSVEIV FKKMQSLVFV DQMRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)