AT1G79950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RAD3-like DNA-binding helicase protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of transcription, DNA-dependent, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), Helicase-like, DEXD box c2 type (InterPro:IPR006554), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G20720.1); Has 3149 Blast hits to 2661 proteins in 831 species: Archae - 223; Bacteria - 987; Metazoa - 718; Fungi - 431; Plants - 207; Viruses - 6; Other Eukaryotes - 577 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30073580..30079537 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116638.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1040 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGFTVVSRSG SPTRRENQKR RVCFRLLLRL LRRGFVVLSA ESDPKMPNYS IRGINVEFPF EAYQSQIIYM DRVIESLQNK CHALLESPTG TGKTLCLLCA 0101: TLAWRKSLGS FSTRKDRKNS AIPWSDSDEP LSQSGGGGGG AFPTIVYASR THSQLRQVIK ELKRSSYRPK MVVLGSREQL CVNEEVNSLR GKALTNACQY 0201: LCKKRGKRQC NHFNRLPDYL KHNPHIGDEP VDIEDLVNIG KDSGPCPYYI TRELHKDVDI IFAPYNYLIS NGYRKFLKVN WTNSVLIFDE AHNLESLCAD 0301: SASFDLPSVL LSACISEAQE CVQLAAARRD SLNDVSINPE NFAILKGLLL KLQELISKVP IPKRDEGFTK PGPYIYEMLK SLNITHETAP KLIGTVEEAA 0401: VFLEEEKQRT ATNAGSKLEI IADMLKLIFR ENGSNHADVY RVHVQELEQN STDVMKGKVS RTLSWWCFSP GITMLDIAQK GVGSIILTSG TLSPMDSLAQ 0501: ELKLDFPIRL ENPHVISSNQ LWAGVVSTGP SGYVLNSSYR NRDVPEYKQE LGNAIVNFSR VVPEGLLIFF PSYYLMDSCI TFWKNGCYRN SMTVWERICK 0601: LKKPVIEPKD SSLFPAAMRD FSEKLQDRAT SGVVFFAVCR GKVSEGLDFA DGAGRAVVIT GLPYARVTDP RVKLKREFLD EQSQLADVKL PRSTLLSGSM 0701: WYSQEAARAV NQAIGRVIRH RHDYGAIIFC DDRFEQPSQQ SKISLWIRPN VKCYSRYGEV ISDLARFFRT ERSNFPARLV TEQENNIVST LLPVESIEDN 0801: PTPAFGNSNL KNVGVAQNEL SRLEAFPPAN RASPLERDGN NVKRNGLTIL KHTGKIPRIV KGDVMQGCSS RKAKLVELSD DEETPVERRC EVVDLESDNC 0901: ETQTCVTEVL ASSTCLNTMG LKKKRKVPES QGSASSSVLT AKGNGGGDKK EASASAFLSQ VKEKLNTEEY KKFIGYMQAL KKKEIKLANV MQSIVQLFCG 1001: SERDHLLMGF KDFVPVKYRP AYEECIKTRK RQSIIFGNSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)