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AT1G48360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.403
nucleus 0.322
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 572 Blast hits to 551 proteins in 242 species: Archae - 0; Bacteria - 261; Metazoa - 71; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G48360EnsemblPlants:AT1G48360.1entrez:841256hmmpanther:PTHR15749
hmmpanther:PTHR15749:SF4Pfam:PF08797
Coordinates (TAIR10) chr1:+:17868661..17872436
Molecular Weight (calculated) 84975.50 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.32
Length 746 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTGRESLLR LIGKRRRFLP NRHLLLSAHT PNSLNLEFND YGNLVSLAGD DCRLSEDPTS SDDPSKFSDD LSLSTRKKRR LTQTTLLQSS FLSVPKQLED
101: GLVICTQQKS ILDSETFEFS LVQRSEPSES ICCKVEDGSC SPSREESLKT VTLDEDNGEA IETFIVGRKF SDVQDLEIGG DIFLLRHPEN VKDRNAIKVI
201: SGDSEMLGYL PKDISQCLSP LIDDYDLKFE GTITSVPKKS SEAVLIKVVC HKMRSDGWKE CELYGDFKPL WEKVLQVVEH QMQFPPKTTR YQLNFNVLLQ
301: EVLRSCSHLF TADEKAFLES FPTLSEDSQR LFIRLYTRKG PWFRLSNISY PEVTDSLQAL KDLTVRGFMS SVKDANELDN QKMKEITELL NVTELRDILS
401: MNKVFSRTSR KRDLINSLCS CYNDGTRINL ATVILERTGL CAKVSSTAES LIWRVERLFF LNGEQDLSSF VLLDLGIIKY PTYKCIDSEQ IFSNRTKLLA
501: YEEAIEVAQL MDESLDNEDP QTVLKCIIIA ETRISSSSLD SAHAAAFNRF TAPWVNSKVV LLGVSFFENQ KRYNRAVYLL RRLLSCFNCD GRRGYWTVRL
601: STDLEHMGRP NESLTVAEQG LLDPWVRAGS RVALQRRILR LAKPPRRWKT PTFSNLVDNK IPEVTIQGRS LNCEVGIKNR FYGEDGEQCG VEQLALQYYS
701: GEGGGWQGIH TESSIWLTIF GLLMWDILFS DVPGVFQTRF QVNETQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)