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AT3G19840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pre-mRNA-processing protein 40C
Curator
Summary (TAIR10)
Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.
Computational
Description (TAIR10)
pre-mRNA-processing protein 40C (PRP40C); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40A (TAIR:AT1G44910.2); Has 7513 Blast hits to 5748 proteins in 436 species: Archae - 33; Bacteria - 336; Metazoa - 3654; Fungi - 967; Plants - 481; Viruses - 7; Other Eukaryotes - 2035 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPZWeggNOG:KOG0155EMBL:AB025631EMBL:AK117183
EMBL:CP002686EnsemblPlants:AT3G19840EnsemblPlants:AT3G19840.1entrez:821521
Gene3D:1.10.10.440GeneID:821521Genevisible:Q9LT25GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G19840.1hmmpanther:PTHR15377
hmmpanther:PTHR15377:SF3HOGENOM:HOG000029352InParanoid:Q9LT25InterPro:IPR001202
InterPro:IPR002713iPTMnet:Q9LT25KEGG:ath:AT3G19840KO:K12824
ncoils:CoilOMA:IRYSKMPPaxDb:Q9LT25Pfam:PF00397
Pfam:PF01846Pfam:Q9LT25Pfscan:PS50020Pfscan:PS51676
PhylomeDB:Q9LT25PRIDE:Q9LT25PRO:PR:Q9LT25PROSITE:PS01159
PROSITE:PS50020PROSITE:PS51676ProteinModelPortal:Q9LT25Proteomes:UP000006548
RefSeq:NP_188618.3scanprosite:PS01159SMART:SM00441SMART:SM00456
SMR:Q9LT25STRING:3702.AT3G19840.1SUPFAM:SSF51045SUPFAM:SSF81698
TAIR:AT3G19840tair10-symbols:ATPRP40Ctair10-symbols:PRP40CUniGene:At.43404
UniProt:Q9LT25
Coordinates (TAIR10) chr3:+:6891228..6897227
Molecular Weight (calculated) 92811.50 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.84
Length 835 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGENTTDPP YTTAASSGQS IFVRPPPIAP VLATTSNFSQ SELKELHSMS IASTGFVSQS VPYSVTAQWG TNAAASSNVN PIPQASPMLA NAPFGRPGTL
101: APPGLMTSPP AFPGSNPFST TPRPGMSAGP AQMNPGIHPH MYPPYHSLPG TPQGMWLQPP SMGGIPRAPF LSHPTTFPGS YPFPVRGISP NLPYSGSHPL
201: GASPMGSVGN VHALPGRQPD ISPGRKTEEL SGIDDRAGSQ LVGNRLDAWT AHKSEAGVLY YYNSVTGQST YEKPPGFGGE PDKVPVQPIP VSMESLPGTD
301: WALVSTNDGK KYYYNNKTKV SSWQIPAEVK DFGKKLEERA MESVASVPSA DLTEKGSDLT SLSAPAISNG GRDAASLKTT NFGSSALDLV KKKLHDSGMP
401: VSSTITSEAN SGKTTEVTPS GESGNSTGKV KDAPGAGALS DSSSDSEDED SGPSKEECSK QFKEMLKERG IAPFSKWEKE LPKIIFDPRF KAIPSHSVRR
501: SLFEQYVKTR AEEERREKRA AHKAAIEGFR QLLDDASTDI DQHTDYRAFK KKWGNDLRFE AIERKEREGL LNERVLSLKR SAEQKAQEIR AAAASDFKTM
601: LREREISINS HWSKVKDSLR NEPRYRSVAH EDREVFYYEY IAELKAAQRG DDHEMKARDE EDKLRERERE LRKRKEREVQ EVERVRQKIR RKEASSSYQA
701: LLVEKIRDPE ASWTESKPIL ERDPQKRASN PDLEPADKEK LFRDHVKSLY ERCVHDFKAL LAEALSSEAA TLQTEDGKTA LNSWSTAKQV LKPDIRYSKM
801: PRQDREVVWR RYVEDISRKQ RHENYQEEKQ RDYKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)