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AT1G55540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21189294 (2010): nucleus nuclear envelope
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nuclear pore complex protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1011 (emb1011); Has 139490 Blast hits to 62156 proteins in 2603 species: Archae - 205; Bacteria - 38902; Metazoa - 46426; Fungi - 17828; Plants - 10200; Viruses - 1892; Other Eukaryotes - 24037 (source: NCBI BLink).
Protein Annotations
BioGrid:27227eggNOG:ENOG410IGCHeggNOG:ENOG411262DEMBL:AC005223
EMBL:AY035068EMBL:CP002684EnsemblPlants:AT1G55540EnsemblPlants:AT1G55540.1
EnsemblPlants:AT1G55540.2entrez:842002ExpressionAtlas:F4I1T7GeneID:842002
Genevisible:F4I1T7GO:GO:0005643GO:GO:0015031GO:GO:0051028
hmmpanther:PTHR23193hmmpanther:PTHR23193:SF23HOGENOM:HOG000176343InParanoid:Q94C88
KEGG:ath:AT1G55540ncoils:CoilOMA:KWVKESAPaxDb:F4I1T7
PIR:H96597PRIDE:F4I1T7PRO:PR:F4I1T7ProteinModelPortal:F4I1T7
Proteomes:UP000006548RefSeq:NP_001117499.2RefSeq:NP_564694.2STRING:3702.AT1G55540.2
SUPFAM:SSF117289TAIR:AT1G55540tair10-symbols:emb1011UniGene:At.19173
UniProt:F4I1T6UniProt:Q94C88UniProt:Q9ZVV0
Coordinates (TAIR10) chr1:-:20734759..20743049
Molecular Weight (calculated) 192580.00 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.44
Length 1816 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSRVEIEEDT EGDRISTNDY YFERIGEPIS IKEDDAQYDL ENPPSQPLAI SERHAVLFVA HSSGFFVGRT NDVISASKNS NGNGDKVFIQ DLSLVDVPVG
0101: DVRILSLSAD DSILAVTVAA DIHFFSVDSL LKKDAKPSFS YSPDESGFVK DFRWRRNDKH SYLVLSNTGK LFHGIDNAPP RHVMDAVDAV EWSSKGSYIA
0201: VAQDNSLRIF SSKFNEKRCI ALSFDSWIGD SDEDCFVKVD SIRWVRNNCI LLGCFQLIEG REENYLVQVI RSPDGKISDG STNLVALSFS DLFPCSMDDL
0301: VPVGVGPHLL FSYIDQCKLA VTANRKSIDE HIVLLDWSSG DDKSAVSVVD IDRETFLPRI GLQENNDDNT VMGLCIDRVS IEGTVNVRSG DDELKELQPY
0401: FVLVCLTLEG KLVMFNVASV AGRPASSDTD LASSSDIEDA YTPLIEDDLS KQSSEKHQQL NIAVQNDQKH LNTEKFSTEQ RLPNENIFSK EFESVKSSVS
0501: GDNNKKQEPY AEKPLQVEDA QQSMIPRLSG TSFGQLPMSL GYDTNKFAGF GPALPVSEKL QKDIFAQSNS MHLQANVESK STAAFFGSPG LQNAILQSPQ
0601: NTSSQPWSSG KSVSPPDFVS GPFPSMRDTQ HKQSVQSGTG YVNPPMSIKD KSVQVIETGR VSALSNLSPL LGQNQDTNEG VEKIEPIPSI RASQLSQQVK
0701: SSFEKSASHQ QHKTPLSTGP LRLEHNMSNQ PSNINEMARE MDTLLQSIEG PGGFKDSCAF ILKSNVEELE QGLESLAGKC QTWKSTIHEQ QAEIQHLLDK
0801: TIQVLAKKTY MEGMYKQTAD NQYWQLWNRQ KLNPELEAKR QHIMKLNKDL THQLIELERY FNRLELDRYN EDGGHPVARR GVPNRSAPSR RVQSLHSLHN
0901: TMSSQLAAAE QLSECLSKQM TYLKIDSPVK KNVKQELFET IGIPYDASFS SPDAVKAKNA SSAKNLLLSS IPASINQQSR QRQSSAMKNS DPETARRRRE
1001: SLDRNWAAFE PPKTTVKRML LQEQQKTGMN QQTVLSERLR SANNTQDRSL LHVKDHASPV VSSNKGIMES FQQDTSEAQS TPFKTRPPMP QSNSPFTISP
1101: ISASKPSFNW SGNKSSNTTS YAEESAPSQI KDTRTVSQPG GSSFLPKRPV ASTVLEQTEK KAGEFKFSEA KANAFVETAA GSVQRLSTTS SGSDFESSKG
1201: FGAQFSTMSS GAPASSFSSK SLFGFNSSSS IPGDKFTFPA VTAPLSGTPL DSTSTLFTAS SAPVSSSSQD PVPASIPISS APVPQTFSVT STSTVSATGF
1301: NVPFGKPLTS VKVDLNQAAP STPSPSPGPT AGFTFNLPAL SPSSPEMVSS STGQSSLFPP SAPTSQVSSD QASATSSLTD SSRLFSSTSL SSTPPITPPD
1401: AFQSPQVSTP SSAVPITEPV SEPKKPEAQS SSILSTQSTV DSVANATKTQ NEPLPVKSEI SNPGTTVTPV SSSGFLSGFS SGTQSSLASM AAPSFSWPGS
1501: SQPQQLSSTP APFPASSPTS ASPFGEKKDI VDTQEDEMDE EAPEASQTTE LSMGSFGGFG LGSTPNPGAP KTNPFGGPFG NATTTTSNPF NMTVPSGELF
1601: KPASFNFQNP QPSQPAGFGS FSVTPSQTPA QSGFGQPSQI GGGQQALGSV LGSFGQSRQI GAGLPGATFG SPTGFGGSNP GSGLPNAPAS GGFAAAGSSA
1701: TGGFAAMASA GRGFAGASST PTGGFAALAS GSGGFAGAAP GGGGGGFGGL GSGTGGFGGF APQGSSGGFA GAAGGGGFGG FGGQAQGQAG GGGFSAFGGN
1801: SGATGKPSEL FTQMRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)