AT3G05680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 2016 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2016 (EMB2016); Has 4102 Blast hits to 3495 proteins in 322 species: Archae - 0; Bacteria - 116; Metazoa - 1947; Fungi - 730; Plants - 417; Viruses - 33; Other Eukaryotes - 859 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1660802..1672015 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 234238.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||
| Length | 2138 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVRSEPCVLF AQTFVHPQLD EYVDEVIFAE PVIITACEFL EQNASSSSQA VSLVGATSPP SFALEVFVRC EGESKFKRLC NPFLYTPSAP YPLEVEAVVT 0101: NHLVVRGSYR SLSLIVYGNI VKDLGQYNII LEGRSVTDIV SSTEGNLEDL PLVLHSVNRT IEECLSSLDI VSLPLAAVDL PVEVKRLLQL LLKIFDKLAT 0201: NDVVNKFVDT VVSGVSSYVT DNVDFFLKNK NCSAVTSSLD SGLFHDIVDR VKEDILDLNE IQESDVALGL FSFLESETYL ATSQQLVVML SPYIQFERDS 0301: LCTVLPKLSK GKATLLGLSL AFLLCSGREG CLQFVNSGGM DQLVYLFGHD GQNSTTITLL LLGVVEQATR HSVGCEGFLG WWPREDGSIP SGKSEGYCLL 0401: LKLLMQKPCH EIASLAIYIL RRLRIYEVIS RYEFAVLSAL EGLSNSHGAA THNLNMLSDA KSQLQKLQNL MKSLGSVEDP SPSAYAERSL VSDHSEGWLS 0501: YKATSKLTSS WTCPFYSSGI DSHILALLKE RGFLPLSAAL LSMPELHSKV GDIMDVFTDI AMFIGNIILS FMFSRTGLSF LLHHPELTAT IIQSLKGSVD 0601: LNKEECVPLH YASILISKGF TCSLLEIGIN LEMHLRVVSA VDRLLKSIQQ TEEFLWILWE LRDVSRSDCG REALLTLGVF PEALAVLIEA LHSAKDMEPA 0701: VENSGISPLN LAICHSAAEI FEVIVSDSTA SCLHAWIEHA PVLHKALHTL SPGGSNRKDA PSRLLKWIDA GVVYHKHGVG GLLRYAAVLA SGGDAQLSSS 0801: SILALDLTPA ENGAGESTNV SEMNVLDNLG KVIFEKSFEG VNLSDSSISQ LTTALRILAL ISDNSTVAAA LYDEGAVTVV YAILVNCSFM FERSSNIYDY 0901: LVDDDHGCSS ISDFLSERNR EQSLVDLLIP SLVLLISVLQ RLQGTKEQYR NTKLMKALLR LHREVSPKLA ACAADLSSHY PDSALGFGAV CHLIVSALVC 1001: WPVYGWIPGL FHTLLSGVQT SSVPALGPKE TCSFLCILSD ILPEEGVWFW KSGMPLLSGL RKLAVGTLMG PQKEKQINWY LEPGPLEKLI NHLTPNLDKI 1101: AKIIQHHAVS ALVVIQDMLR VFIVRIACQR VEHASILLRP IFSSIRDGIL DQSSTRDTEA YMVYRYLNFL ASLLEHPHAK GLLLEEGIVQ LLVEVLERCY 1201: DATYPSENRV LEYGIVSASS VIQWCIPAFR SISLLCDSQV PLLCFQKKEL LASLSAKDCA LIFPFVLKFC QVLPVGNELL SCLGAFKDLS SCGEGQDGLV 1301: SLLFHLFSGT EESVSERWCD TNSLSLDQLD MKKNPPFLSC WIKLLNSINS KDGLSSLAMK AVNVLSVGSI RLCLDGKSLD SKKVAALKSL FGLPSEFSGT 1401: DTFREENIGL IEQMVTLLSS MTSGSDSSAT AEMKPYLHEA SQSLLSLLKD GNIDDIISCK GVFVSPGNLD MDDLVSRNIE DDLYQRGLED KFWWECPETL 1501: PERLPQSSLP AKRKLPTLES SSRRAKGENS SVDIPTQNSI QRGMGSVSLP PAPTRRDAFR QRKPNTSRPP SMHVDDYVAR ERSVDTAGNS NAITISRAGS 1601: SSGRPPSIHV DEFMARQRER GQNPSTIVVG EAVVQVKNPT PARDTEKVAG KPKQFKADPD DDLQGIDIVF DGEECEGPDD KLPFLQPDEN LMQPAPVMVE 1701: QNSPHSIVEE TESDANGSSQ FSHMGTPVAS NVDENAQSEF SSRISVSRPE MSLIREPSIS SDRKFVEQAD EAKKMAPLKS AGISESGFIP AYHMPGSSGQ 1801: NSIDPRVGPQ GFYSKSGQQH TGHIHGGFSG RGVYEQKVMP NQPPLPLVPP PSVSPVIPHS SDSLSNQSSP FISHGTQSSG GPTRLMPPLP SAIPQYSSNP 1901: YASLPPRTST VQSFGYNHAG VGTTEQQQSG PTIDHQSGNL SVTGMTSYPP PNLMPSHNFS RPSSLPVPFY GNPSHQGGDK PQTMLLVPSI PQSLNTQSIP 2001: QLPSMQLSQL QRPMQPPQHV RPPIQISQPS EQGVSMQNPF QIPMHQMQLM QQTQVQPYYH PPQQQEISQV QQQQQHHAVQ GQQGAGTSQQ QESGMSLHDY 2101: FKSPEAIQAL LSDRDKLCQL LEQHPKLMQM LQEKLGQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)