AT1G16290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.815 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5570938..5573538 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47943.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.38 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 419 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANSFTFWND CVEPEDLEEM WMDPAVSAEW IDVGETKGQK VHLSRDPDGQ PYLTQTEMRA VSDITVRRHF DSILDSEMIC AIAELESDRK PLIMRYSKKT 101: KETGLGILQV FEKTAAWLAG GQGYQAYNVD DNPDLLHKPF INVYFGAAYL KWLTDYQNNQ RSEEFVVRAY NGGTKKATHK STLPYWKRYL AVKESLPSRK 201: HGDAGPSSFR PTNPASPGSN TDFTYWDSRA SPEDMEDMWN QSEICKEWTK SKEERGKVRF SQDGEKRPYL SRGELKAVAE IIVSKYFSTK GIRVPLVCAI 301: ADTVCMRFVN GIKKHVGILG VDYSTASWLY SELGYRAYRV DSADDLTKPF ISMYFGVAYL VWLSEYEGSQ RSNQFIVQAY MKGPDHVDLE ESCPLWLKFE 401: QALSYYEESK RDSGSCVIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)