AT3G08930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.854 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LMBR1-like membrane protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LMBR1-like membrane protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: LMBR1-like membrane protein (TAIR:AT5G01460.1); Has 384 Blast hits to 384 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 85; Plants - 80; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2713562..2717058 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56548.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 509 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDFNLALVI VAIVVCVIVF ISSIYLLVNY QHPDDANQAY FPKFVVVFGL SIAMISILML PADVANRHAC RHAIYNGACN LTLPMKDLWL AIYIVDAILV 101: FFVIPFAMFF YEGDQDKTLG KRIKSALIWV VTTAVVCALV LGILYGVIGK VDFSVRHLAS ATSTFPTSWQ FSNTQPCIGN TARQCSAFTA NPTSEKTWTM 201: RTTFPEYVVA LATIVGSVLF TIFGGVGIAC LPLGLITAFI RRPKAVITRS QYIKEATELG KKARELKKAA DGLHQEERSG AKGRKWRKNV KAVEKELLQL 301: EEDVNLLEEM YPQGEQAETA WAFTVLGYLA KFILGIVGLI VSIAWVAHII IYLLVDPPLS PFLNEVFIKL DDVWGLLGTA AFAFFCFYLL LAVIAGAMML 401: GLKLVFITIH PMKWGATLMN SFLFNVGLIL LCSISVIQFC ATAFGYYAQA TAAQEIFGHT LQSLRGIKYL YKYNVFQIGF VILAGLTFLY YIAFGWRRKK 501: TSGRFQLSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)