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AT5G42190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Curator
Summary (TAIR10)
Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.
Computational
Description (TAIR10)
E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: S phase kinase-associated protein 1 (TAIR:AT1G75950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19474DIP:DIP-31326NeggNOG:COG5201eggNOG:KOG1724EMBL:AB017067EMBL:AF059295EMBL:AK227773
EMBL:BT004798EMBL:CP002688EMBL:U97021EnsemblPlants:AT5G42190EnsemblPlants:AT5G42190.1entrez:834224GeneID:834224
Genevisible:Q9FHW7GO:GO:0005634GO:GO:0006511GO:GO:0007059GO:GO:0009734GO:GO:0009793GO:GO:0009873
GO:GO:0016032GO:GO:0016567Gramene:AT5G42190.1hmmpanther:PTHR11165HOGENOM:HOG000172184InParanoid:Q9FHW7IntAct:Q9FHW7
InterPro:IPR001232InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897KEGG:ath:AT5G42190KO:K03094
OMA:IAKQSITPaxDb:Q9FHW7Pfam:PF01466Pfam:PF03931Pfam:Q9FHW7PhylomeDB:Q9FHW7PIRSF:PIRSF028729
PRIDE:Q9FHW7PRO:PR:Q9FHW7ProteinModelPortal:Q9FHW7Proteomes:UP000006548RefSeq:NP_568603.1SMART:SM00512SMR:Q9FHW7
STRING:3702.AT5G42190.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT5G42190tair10-symbols:ASK2tair10-symbols:SKP1BUniGene:At.23304
UniGene:At.71056UniPathway:UPA00143UniProt:Q9FHW7
Coordinates (TAIR10) chr5:-:16854495..16855516
Molecular Weight (calculated) 19098.30 Da
IEP (calculated) 4.24
GRAVY (calculated) -0.48
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)