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AT5G57900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SKP1 interacting partner 1
Curator
Summary (TAIR10)
F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner
Computational
Description (TAIR10)
SKP1 interacting partner 1 (SKIP1); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G30640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21145eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AB013396
EMBL:AF263377EMBL:AK229464EMBL:BT026067EMBL:CP002688
EnsemblPlants:AT5G57900EnsemblPlants:AT5G57900.1entrez:835901Gene3D:3.80.10.10
GeneID:835901Genevisible:Q9FDX1GO:GO:0005634GO:GO:0016567
GO:GO:0019005Gramene:AT5G57900.1hmmpanther:PTHR24006HOGENOM:HOG000242674
InParanoid:Q9FDX1IntAct:Q9FDX1InterPro:IPR001611InterPro:IPR001810
InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT5G57900OMA:VFHTERY
PaxDb:Q9FDX1Pfam:PF13516Pfam:Q9FDX1PhylomeDB:Q9FDX1
PRIDE:Q9FDX1PRO:PR:Q9FDX1ProteinModelPortal:Q9FDX1Proteomes:UP000006548
RefSeq:NP_568870.1SMART:SM00367SMR:Q9FDX1STRING:3702.AT5G57900.1
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT5G57900tair10-symbols:SKIP1
UniGene:At.7657UniPathway:UPA00143UniProt:Q9FDX1
Coordinates (TAIR10) chr5:-:23449916..23450915
Molecular Weight (calculated) 34567.30 Da
IEP (calculated) 5.80
GRAVY (calculated) -0.30
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS
101: DHALSYAADR CPNLQVLAIR SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH IGSVPTEYLD ACPQDGDTEA
201: DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)