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AT5G06370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.910
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NC domain-containing protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT3G02700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEM6eggNOG:ENOG410XNRZEMBL:AF380637EMBL:AK226465
EMBL:AY054134EMBL:CP002688EnsemblPlants:AT5G06370EnsemblPlants:AT5G06370.1
entrez:830525Gene3D:3.90.1720.10GeneID:830525GO:GO:0016746
Gramene:AT5G06370.1hmmpanther:PTHR13943hmmpanther:PTHR13943:SF44HOGENOM:HOG000241343
IntAct:Q93V51InterPro:IPR000064InterPro:IPR007053KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-KEGG:ath:AT5G06370
OMA:TMGQSGQPfam:PF04970PhylomeDB:Q93V51Proteomes:UP000006548
RefSeq:NP_568167.1STRING:3702.AT5G06370.1TAIR:AT5G06370UniGene:At.7283
UniGene:At.74071UniProt:Q93V51
Coordinates (TAIR10) chr5:-:1947299..1948432
Molecular Weight (calculated) 27848.60 Da
IEP (calculated) 7.97
GRAVY (calculated) 0.14
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)