AT3G55290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55310.1); Has 128769 Blast hits to 128555 proteins in 3647 species: Archae - 1021; Bacteria - 82974; Metazoa - 6760; Fungi - 6996; Plants - 3211; Viruses - 5; Other Eukaryotes - 27802 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20502653..20503730 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30205.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSNHQTQVLK LLEPWCELKD KVVLVTGASS GIGREICLDL AKAGCQVIAA ARRVDRLNSL CSEINSFSST GIQAAALELD VSSDAATIQK AVREAWDIFG 101: KIDALINNAG IRGNVKSSLD LSEDEWDNVF KTNLKGPWLV SKHVCMLMRD AKRGGSVINI SSIAGIRGML PGGLAYACSK GGVDTMSRMM ALELGVHKIR 201: VNSIAPGLFK SEITQGLMQK EWLKNVTERT VPLKVQQTVD PGLTSLVRYL IHDSSQYISG NTYIVDSGAT LPGVPIFSSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)