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AT1G06640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.822
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06650.2); Has 8123 Blast hits to 8085 proteins in 990 species: Archae - 0; Bacteria - 1087; Metazoa - 116; Fungi - 743; Plants - 4881; Viruses - 0; Other Eukaryotes - 1296 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06640-MONOMERBioCyc:ARA:GQT-1668-MONOMERBioCyc:ARA:GQT-2194-MONOMEReggNOG:COG3491
eggNOG:KOG0143EMBL:AC007592EMBL:AF360185EMBL:AK226396
EMBL:AY040000EMBL:CP002684EnsemblPlants:AT1G06640EnsemblPlants:AT1G06640.1
entrez:837173ExpressionAtlas:Q9C5K7Gene3D:2.60.120.330GeneID:837173
Genevisible:Q9C5K7GO:GO:0016491GO:GO:0046872hmmpanther:PTHR10209
hmmpanther:PTHR10209:SF122HOGENOM:HOG000276735InterPro:IPR005123InterPro:IPR026992
InterPro:IPR027443OMA:EPIGHEPPaxDb:Q9C5K7Pfam:PF03171
Pfam:PF14226Pfam:Q9C5K7Pfscan:PS51471PhylomeDB:Q9C5K7
PIR:D86201PRIDE:Q9C5K7PRO:PR:Q9C5K7PROSITE:PS51471
ProteinModelPortal:Q9C5K7Proteomes:UP000006548RefSeq:NP_172149.1RefSeq:NP_973774.1
SMR:Q9C5K7STRING:3702.AT1G06640.1SUPFAM:SSF51197TAIR:AT1G06640
UniGene:At.24080UniProt:Q9C5K7
Coordinates (TAIR10) chr1:+:2032366..2033775
Molecular Weight (calculated) 41747.30 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.28
Length 369 amino acids
Sequence (TAIR10)
(BLAST)
001: MESTKIAPSF DRASELKAFD ETKTGVKGLV DSGISKIPRI FHHSSVELAN PKPLPSDLLH LKTIPTIDLG GRDFQDAIKH KNAIEGIKEA AAKWGFFQVI
101: NHGVSLELLE KMKDGVRDFH EQPPEVRKDL YSRDFGRKFI YLSNFDLYTA AAANWRDTFY CYMAPDPPEP QDLPEICRDV MMEYSKQVMI LGEFLFELLS
201: EALGLNPNHL KDMECLKGLR MLCHYFPPCP EPDLTFGTSK HSDGSFLTVL LPDNIEGLQV CREGYWFDVP HVPGALIINI GDLLQLITND KFISLKHRVL
301: ANRATRARVS VACFFHTHVK PNPRVYGPIK ELVSEENPPK YRETTIRDYA TYFNGKGLGG TSALLDFKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)