AT5G65280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.704 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GCR2-like 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor. Loss of function mutations in GCL1 show no ABA response defects based on assays of seed germination and seedling development.GCL1 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GCR2-like 1 (GCL1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26086129..26088069 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46826.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 433 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSVDFVTE QGRCGDDGNG AGETVKNGEI DHLLSEPSAP TISLPTESFL RAATLLKNQV VEATWKGGVE ALASGSGPVL DPTVYTGLLG TAFTCLKSYE 101: VTRNHQDLLT CAEIIDTCAN VARATTRHVT FLCGRGGVCT LGAIVANYRG DQSKRDFFLG LFLELAEERE LPAGPEEGGF GMSYDLLYGR AGFLWAALFL 201: NRYLGQGTVP DHLLSPIVAA ILAGGRVGAA DHEACPLLYR FHGTRFWGAA NGLAGILYVL LHFPLSEEDV KDVQGTLRYM MSNRFPNSGN YPCSEGNPRD 301: KLVQWAHGAT GMAITLAKAS QVFPKERDFR EAAIEAGEVV WKSGLVKKVG LADGVAGNAY AFLSLYRLTG DVVYEERAKA FASYLCRDAI ELVNMTSQET 401: EHDYSLFRGL AGPVCLWFDL VSPVDSKFPG YEI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)