AT4G29700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Alkaline-phosphatase-like family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2237 Blast hits to 2218 proteins in 571 species: Archae - 24; Bacteria - 916; Metazoa - 704; Fungi - 177; Plants - 108; Viruses - 6; Other Eukaryotes - 302 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:14543739..14545124 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51590.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.89 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKTKNVISF KLSLIFLLNI FIVATIAAAA AVNAGTKGLD SRPSKTRRPW PFKKLNKPVV LMISCDGFRF GYQFKTDTPN IDLLISGGTE AKHGLIPVFP 101: TMTFPNHYSI ATGLYPAYHG IIMNKFTDPV TGEVFNKGLQ PKWWLGEPLW VTAVNQGLKA VTYFWPGSEV LKSSWTCPEG YCPHFNLSVP LEERVDSVLS 201: HFDHLEDEVP DLLMLYFDEP DQSGHNYGPD DPRVTTAVSR VDKMIGRVIK GLKQREIFDE VHVILLGDHG MVTNCECNEK AIYIDDLADW IKIPAAWIQA 301: YSPVLAINPQ WGKDVENQSE KNAEVVAKMN EALSSGKVKN GEFLKVYLKE KLPERLHFSE SYRIPPIIGI VGEGLMVRQN RTNAQVCYGD HGYDNELFSM 401: RTIFVGHGSR FSRGKKVPSF ENVQIYNVVA ELLGLRPAPN NGSSLFPRSI LLPSGATREV K |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)