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AT4G29690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.762
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alkaline-phosphatase-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29700.1); Has 2123 Blast hits to 2102 proteins in 549 species: Archae - 19; Bacteria - 886; Metazoa - 669; Fungi - 140; Plants - 106; Viruses - 6; Other Eukaryotes - 297 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G29690-MONOMERDNASU:829090EC:3.6.1.9eggNOG:COG1524
eggNOG:KOG2645EMBL:AL079344EMBL:AL161575EMBL:CP002687
EnsemblPlants:AT4G29690EnsemblPlants:AT4G29690.1entrez:829090Gene3D:3.40.720.10
GeneID:829090GO:GO:0035529Gramene:AT4G29690.1hmmpanther:PTHR10151
InterPro:IPR002591InterPro:IPR017849InterPro:IPR017850InterPro:IPR024873
KEGG:ath:AT4G29690OMA:WIKIPADPANTHER:PTHR10151Pfam:PF01663
PhylomeDB:Q9SU82PIR:T09932Proteomes:UP000006548Reactome:R-ATH-1660662
Reactome:R-ATH-196843RefSeq:NP_194698.1SMR:Q9SU82STRING:3702.AT4G29690.1
SUPFAM:SSF53649TAIR:AT4G29690TMHMM:TMhelixUniGene:At.31898
UniProt:Q9SU82
Coordinates (TAIR10) chr4:-:14541084..14542457
Molecular Weight (calculated) 51263.80 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.23
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKSKPGRSG FSGYILYKLS LTVLIVLSVA VTANGSDSPS SYVRRPQPPK KLNKPVVLLI SCDGFRFGYQ FKTETPNIDL LISRGTEAKT GLIPVFPTMT
101: FPNHYSIATG LYPASHGIIM NKFTDPVSGE LFNRNLNPKW WLGEPLWVTA VNQGLMAATY FWPGADVHKG SWNCPKGFCK APYNVSVPLE ERVDTILNYF
201: DLPEREIPDF MALYFDEPDI QGHEYGPDDP RVTEAVSKVD KMIGRIIMGL EKRKVFSDVH VILLGDHGMV TNCDKKVIYI DDLADWIKIP ADWIQDYSPV
301: LAMNPRWGKD VKNPGQKNAE LVRKMNEALS SGKVANGEFL QVYLKENLPQ RLHYSDSSRI PPIIGMVGEG LMVKQNRTYV QECSGTHGYD NMFFSMRSIF
401: VGYGPRFRRG IKVPSFENVQ VYNAVAEILG LRPAPNNGSS LFTRSLLLPF GETSQVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)