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AT2G43535.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Scorpion toxin-like knottin superfamily protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: Scorpion toxin-like knottin superfamily protein (TAIR:AT1G47540.1); Has 146 Blast hits to 146 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
EMBL:AC002335EMBL:AJ632250EMBL:AJ632252EMBL:AJ632253
EMBL:AJ632254EMBL:AJ632255EMBL:AJ632256EMBL:AJ632257
EMBL:AJ632258EMBL:AJ632259EMBL:AJ632260EMBL:AJ632261
EMBL:AJ632262EMBL:AJ632263EMBL:AJ632264EMBL:AJ632265
EMBL:AJ632266EMBL:AK228120EMBL:AY088677EMBL:BT009648
EMBL:CP002685EnsemblPlants:AT2G43535EnsemblPlants:AT2G43535.1entrez:818955
Gene3D:3.30.30.10GeneID:818955Genevisible:Q8RYE7GO:GO:0005576
GO:GO:0008200GO:GO:0031640GO:GO:0050832Gramene:AT2G43535.1
HOGENOM:HOG000090027InterPro:IPR002061InterPro:IPR003614KEGG:ath:AT2G43535
MEROPS:I18.002OMA:CQKDKGAPaxDb:Q8RYE7Pfam:PF00537
Pfam:Q8RYE7PhylomeDB:Q8RYE7PRIDE:Q8RYE7PRO:PR:Q8RYE7
ProteinModelPortal:Q8RYE7Proteomes:UP000006548RefSeq:NP_566000.1SMART:SM00505
SMR:Q8RYE7SUPFAM:SSF57095TAIR:AT2G43535TMHMM:TMhelix
UniGene:At.18213UniGene:At.21811UniGene:At.43904UniProt:Q8RYE7
Coordinates (TAIR10) chr2:+:18071130..18071560
Molecular Weight (calculated) 10672.00 Da
IEP (calculated) 5.04
GRAVY (calculated) 0.32
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MAKMSALSIF AIFIILVLVI FEIPEIEAHD SECLKEYGGD VGFGFCAPKI FPTICYRNCQ KDKGANGGKC LWGEGGKVKC LCDFCSNESF NQFISLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)