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AT2G44130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.964
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G59940.1); Has 5544 Blast hits to 3569 proteins in 209 species: Archae - 8; Bacteria - 363; Metazoa - 3928; Fungi - 26; Plants - 960; Viruses - 5; Other Eukaryotes - 254 (source: NCBI BLink).
Protein Annotations
BioGrid:4355eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC004005
EMBL:AY074864EMBL:AY088471EMBL:AY124843EMBL:CP002685
EnsemblPlants:AT2G44130EnsemblPlants:AT2G44130.1entrez:819019Gene3D:2.130.10.80
GeneID:819019Genevisible:O80582GO:GO:0005829GO:GO:2000762
Gramene:AT2G44130.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF34HOGENOM:HOG000239167
InParanoid:O80582IntAct:O80582InterPro:IPR001810InterPro:IPR006652
InterPro:IPR015916KEGG:ath:AT2G44130OMA:DECQGFAPaxDb:O80582
Pfam:O80582Pfam:PF00646Pfam:PF01344PhylomeDB:O80582
PIR:T00693PRIDE:O80582PRO:PR:O80582ProteinModelPortal:O80582
Proteomes:UP000006548RefSeq:NP_566009.1SMART:SM00256SMART:SM00612
SMR:O80582STRING:3702.AT2G44130.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT2G44130UniGene:At.48588UniGene:At.75169UniProt:O80582
Coordinates (TAIR10) chr2:+:18253731..18254960
Molecular Weight (calculated) 45889.40 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.42
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMEVSKKKG GDFQQCHELI PGLPSELALE CLVRVPFQFQ SAMRSVCRSW RSLLSDSSFI QERRRCGKTE LLLCLVQPLT PPIPASKSVD ETLMVDEKKS
101: EDESHPRVFC TPRFGLSVYN AAMSTWHRVA FPEEEQIPLF CECVVLQDAG KILLIGGWDP ETLQPTRDVY VLEFAGRKWR RGAPMKESRS FFACASVSPT
201: KVYVAGGHDD QKNALRSAEV YDVEKDEWSS VTPMTEGRDE CQGFAVGMGL RFCVLSGYGT ESQGRFRSDG EIYDPATDSW SRIDNVWRFP DTSPRGRTAG
301: DFRSSSTLWC FTDTDLQSER RWETNDDSRN LKLDLQSIQL PMTGSSVFAG SLGGESVVMI GGKRESEGEG EGGVMMKMTT EKKMGKWSHH VHIPCDFSTL
401: PFSHASIYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)