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AT1G26930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 7430 Blast hits to 4183 proteins in 281 species: Archae - 4; Bacteria - 357; Metazoa - 5522; Fungi - 18; Plants - 1152; Viruses - 81; Other Eukaryotes - 296 (source: NCBI BLink).
Protein Annotations
BioGrid:24818eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC005508
EMBL:AK227412EMBL:BT006467EMBL:CP002684EnsemblPlants:AT1G26930
EnsemblPlants:AT1G26930.1entrez:839583Gene3D:2.130.10.80GeneID:839583
Genevisible:Q84M94GO:GO:0005634GO:GO:0005777Gramene:AT1G26930.1
hmmpanther:PTHR24413hmmpanther:PTHR24413:SF138HOGENOM:HOG000239488InParanoid:Q84M94
IntAct:Q84M94InterPro:IPR006652InterPro:IPR015916KEGG:ath:AT1G26930
OMA:RADYCSIPaxDb:Q84M94Pfam:PF01344Pfam:Q84M94
PhylomeDB:Q84M94PIR:C86396PRIDE:Q84M94PRO:PR:Q84M94
PROSITE:PS00678ProteinModelPortal:Q84M94Proteomes:UP000006548RefSeq:NP_174015.2
SMART:SM00612SMR:Q84M94STRING:3702.AT1G26930.1SUPFAM:0052715
TAIR:AT1G26930UniGene:At.26913UniProt:Q84M94
Coordinates (TAIR10) chr1:-:9336211..9337476
Molecular Weight (calculated) 47197.20 Da
IEP (calculated) 7.33
GRAVY (calculated) -0.35
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MFEGRPRDSC LVSTLFTMPS HKETKWSFLV SGKRSFLNND ESDLHFKKMY KLTTDSSEGE DNGSSSDSGT LIPGMNRDDS LSCLIRCSRA DYCSIASVNR
101: SLRSLIRSGE IYRLRRLQGT LEHWVYFSCH LNEWEAFDPR SKRWMHLPSM PQNECFRYAD KESLAVGTDL LVFGWEVSSY VIYRYSLLTN SWSTAKSMNM
201: PRCLFGSASY GEIAVLAGGC DSSGRILDTA ELYNYEDQTW LVLPGMNKRR KMCSGVFMDG KFYVIGGIGV GEENEPKVLT CGEEFDLKTR KWTEIPEMSP
301: PRSNQGNGMS AAAMAPPLVA VVNDQLYAAD HAGMAVRRYD KEKRVWNKVG NLPEQAGSMN GWGLAFRACG DRIIVIGGPK APGEGFIELN SWVPSVTTPE
401: WHLLGKKQSV NFVYNCAVMS C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)