AT5G08750.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.366 golgi 0.285 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:2853066..2854343 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39431.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 363 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGKENQLETT DCGVSDHGSP PIKNEEHEAP RYSSDKDTGL PTCRVCQCAE SDRRGDAALG FLGITPPVSE PRRSNAGEET VDQRSSVVKS SGFIELISPD 101: GEVFVCANDD IEMGAWQHRD KLLELGCSCK NDLALVHYAC ALKWFVNHGS TVCEICGKTT ENIRTVDFNK VVIALKDYAA LRERTADGDP NPVVVNNNTS 201: SSGIDPDAVA AIRRQRLSEI SLWFGPHCST NNNNSSNSAA AGTASSQVTS EQPVGIVNFD ILPMESRATK WAVEGTGILL ATGLLTVTLA WLIAPRVGKR 301: TAKSGLHILL GGLCALTVVI FFRFVVLTRI RYGPARYWAI LFVFWFLVFG IWASRSHASH SST |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)