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AT5G08750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.366
golgi 0.285
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G63780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5183eggNOG:KOG1609EMBL:AK117992EMBL:AL590346
EMBL:BT025244EMBL:CP002688EnsemblPlants:AT5G08750EnsemblPlants:AT5G08750.1
EnsemblPlants:AT5G08750.2entrez:830776ExpressionAtlas:Q9C5A2Gene3D:3.30.40.10
GeneID:830776GO:GO:0008270GO:GO:0016021Gramene:AT5G08750.1
Gramene:AT5G08750.2hmmpanther:PTHR23012hmmpanther:PTHR23012:SF66InterPro:IPR011016
InterPro:IPR013083InterPro:IPR033275KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-
KEGG:00380+6.3.2.-KEGG:ath:AT5G08750PANTHER:PTHR23012Pfam:PF12906
Pfscan:PS51292PhylomeDB:Q9C5A2PROSITE:PS51292Proteomes:UP000006548
RefSeq:NP_001078547.1RefSeq:NP_568206.1SMART:SM00744STRING:3702.AT5G08750.3
SUPFAM:SSF57850TAIR:AT5G08750TMHMM:TMhelixUniGene:At.26266
unipathway:UPA00143UniProt:Q9C5A2
Coordinates (TAIR10) chr5:+:2853066..2854343
Molecular Weight (calculated) 39431.70 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.09
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKENQLETT DCGVSDHGSP PIKNEEHEAP RYSSDKDTGL PTCRVCQCAE SDRRGDAALG FLGITPPVSE PRRSNAGEET VDQRSSVVKS SGFIELISPD
101: GEVFVCANDD IEMGAWQHRD KLLELGCSCK NDLALVHYAC ALKWFVNHGS TVCEICGKTT ENIRTVDFNK VVIALKDYAA LRERTADGDP NPVVVNNNTS
201: SSGIDPDAVA AIRRQRLSEI SLWFGPHCST NNNNSSNSAA AGTASSQVTS EQPVGIVNFD ILPMESRATK WAVEGTGILL ATGLLTVTLA WLIAPRVGKR
301: TAKSGLHILL GGLCALTVVI FFRFVVLTRI RYGPARYWAI LFVFWFLVFG IWASRSHASH SST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)