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AT5G26940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 3712 Blast hits to 3712 proteins in 1305 species: Archae - 2; Bacteria - 3079; Metazoa - 40; Fungi - 0; Plants - 53; Viruses - 4; Other Eukaryotes - 534 (source: NCBI BLink).
Protein Annotations
EC:3.1.11.-eggNOG:ENOG4111YSPeggNOG:KOG4793EMBL:AF007270
EMBL:AK175271EMBL:AK175526EMBL:AY087151EMBL:BT025876
EMBL:CP002688EnsemblPlants:AT5G26940EnsemblPlants:AT5G26940.1EnsemblPlants:AT5G26940.2
EnsemblPlants:AT5G26940.3EnsemblPlants:AT5G26940.4entrez:832752Gene3D:3.30.420.10
GeneID:832752Genevisible:Q682U6GO:GO:0000738GO:GO:0003676
GO:GO:0004527GO:GO:0005739GO:GO:0009507GO:GO:0009536
GO:GO:0046872Gramene:AT5G26940.1Gramene:AT5G26940.2Gramene:AT5G26940.3
Gramene:AT5G26940.4hmmpanther:PTHR13058hmmpanther:PTHR13058:SF19HOGENOM:HOG000095607
InParanoid:Q682U6InterPro:IPR012337InterPro:IPR013520iPTMnet:Q682U6
KEGG:ath:AT5G26940OMA:RPDVPRMPaxDb:Q682U6Pfam:PF00929
Pfam:Q682U6PIR:T01771PRIDE:Q682U6PRO:PR:Q682U6
ProteinModelPortal:Q682U6Proteomes:UP000006548RefSeq:NP_198046.1RefSeq:NP_851082.1
RefSeq:NP_851083.1RefSeq:NP_974842.1SMART:SM00479SMR:Q682U6
STRING:3702.AT5G26940.1SUPFAM:SSF53098TAIR:AT5G26940UniGene:At.20000
UniProt:Q682U6
Coordinates (TAIR10) chr5:+:9481429..9482647
Molecular Weight (calculated) 35249.60 Da
IEP (calculated) 9.60
GRAVY (calculated) -0.19
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MCISISQVSR LRIHSFGSSC CERVHGWIKN SSSLKLLDVR ASSVDGKARW IRRNVSTTTQ GSRSNTKSSV LGGTVPVTRI IDEESRTKVQ PFGNLQQRLA
101: QDKDLSKLLT VIVSDLETTG LHRKNERIIE IAAQDIAGGG YSTFQTLVNP GVVPITNAHI HGIRNDMVCR PEVPRMEELI PIFLRYVESR QKPGGYVMLV
201: AHNGKSFDFQ FLINEFNRCS YEIPHNWLLL DSLPLARENM KSVEPTVKLS SSLEALADYY SLTREGDAHR ALSDVLLLSK VFQKLTIDLK LSLSDLVLRC
301: HTASDISAAM AKNKKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)