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AT5G14140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding;nucleic acid binding;zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding;nucleic acid binding;zinc ion binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); Has 287 Blast hits to 281 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 82; Plants - 70; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111TX5eggNOG:KOG4173EMBL:AB493748EMBL:AK228356
EMBL:CP002688EnsemblPlants:AT5G14140EnsemblPlants:AT5G14140.1entrez:831264
GeneID:831264GO:GO:0046872Gramene:AT5G14140.1hmmpanther:PTHR21354
hmmpanther:PTHR21354:SF0InterPro:IPR007087InterPro:IPR015880KEGG:ath:AT5G14140
OMA:HVSEAHDPROSITE:PS00028Proteomes:UP000006548RefSeq:NP_196918.2
scanprosite:PS00028SMART:SM00355SMR:Q0WRF4STRING:3702.AT5G14140.1
TAIR:AT5G14140UniGene:At.31969UniProt:Q0WRF4
Coordinates (TAIR10) chr5:+:4561539..4563513
Molecular Weight (calculated) 30104.60 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.67
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGMAVDTV GELGFPYWNP IRRRFPPDSP FFASGNVERE LLAKQVTLDF TEDEINHLHK FVEIETRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV
101: CSRVYPTSRL LSIHISEAHD SFFQAKVSRG YDMYECLVEG CGLKFKTYKA RHRHLIDKHK FPTTFEFFKK TQLSKKRREK LQRQHVSKLK HEEDKEAASS
201: DAMEVEDKGS LDGLVSALSS LTTSDTTPSN VSFGRRHGRG LTFVPRSVHR EKRTESSSAP GPTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)