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AT1G25280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubby like protein 10
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 1 (TAIR:AT1G76900.2); Has 961 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 353; Fungi - 21; Plants - 475; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Protein Annotations
BioGrid:24349eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AC079374
EMBL:AF487271EMBL:AK317199EMBL:AY140459EMBL:AY140460
EMBL:AY140461EMBL:AY140462EMBL:AY140463EMBL:AY140464
EMBL:AY140465EMBL:AY140466EMBL:AY140467EMBL:AY140468
EMBL:AY140469EMBL:BT001997EMBL:BT006290EMBL:CP002684
EnsemblPlants:AT1G25280EnsemblPlants:AT1G25280.1entrez:839112ExpressionAtlas:Q9FRH7
Gene3D:3.20.90.10GeneID:839112Genevisible:Q9FRH7GO:GO:0003700
GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0006355
GO:GO:0009536GO:GO:0009620GO:GO:0016567GO:GO:0035091
hmmpanther:PTHR16517hmmpanther:PTHR16517:SF31HOGENOM:HOG000238161InParanoid:Q9FRH7
IntAct:Q9FRH7InterPro:IPR000007InterPro:IPR001810InterPro:IPR018066
InterPro:IPR025659iPTMnet:Q9FRH7KEGG:ath:AT1G25280MINT:MINT-8059072
OMA:SEMGISCPaxDb:Q9FRH7Pfam:PF00646Pfam:PF01167
Pfam:Q9FRH7PhylomeDB:Q9FRH7PIR:E86382PRIDE:Q9FRH7
PRINTS:PR01573PRO:PR:Q9FRH7PROSITE:PS01200PROSITE:PS01201
ProteinModelPortal:Q9FRH7Proteomes:UP000006548RefSeq:NP_001117353.1RefSeq:NP_173899.1
RefSeq:NP_973909.1scanprosite:PS01200scanprosite:PS01201SMR:Q9FRH7
STRING:3702.AT1G25280.1SUPFAM:SSF54518SUPFAM:SSF81383TAIR:AT1G25280
tair10-symbols:AtTLP10tair10-symbols:TLP10UniGene:At.23717UniPathway:UPA00143
UniProt:Q9FRH7
Coordinates (TAIR10) chr1:+:8864961..8866608
Molecular Weight (calculated) 50012.80 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.36
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)