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AT1G23780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.971
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G23770.1); Has 310 Blast hits to 310 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 148; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JR3YeggNOG:ENOG41121G7EMBL:AB498165EMBL:AB498167
EMBL:AB498172EMBL:AB498173EMBL:AB498174EnsemblPlants:AT1G23780
EnsemblPlants:AT1G23780.1entrez:838989ExpressionAtlas:C1PI94GeneID:838989
Gramene:AT1G23780.1hmmpanther:PTHR15537hmmpanther:PTHR15537:SF2InterPro:IPR001810
KEGG:ath:AT1G23780KO:K10293OMA:HHETRETPfam:PF12937
Pfam:Q9ZUB8Pfscan:PS50181PhylomeDB:C1PI94PROSITE:PS50181
RefSeq:NP_564203.1SMART:SM00256SMR:C1PI94STRING:3702.AT1G23780.1
SUPFAM:SSF81383TAIR:AT1G23780UniGene:At.10947UniGene:At.67635
UniProt:C1PI94UniProt:Q9ZUB8
Coordinates (TAIR10) chr1:-:8407053..8408480
Molecular Weight (calculated) 52950.30 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.29
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)