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AT2G18780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.836
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box and associated interaction domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G16740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DNASU:816393EMBL:AC005724EMBL:AY227634EMBL:AY954790
EMBL:BT029000EMBL:CP002685EnsemblPlants:AT2G18780EnsemblPlants:AT2G18780.1
entrez:816393GeneID:816393Genevisible:Q84V15Gramene:AT2G18780.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF120HOGENOM:HOG000112505InParanoid:Q84V15
InterPro:IPR001810InterPro:IPR006527InterPro:IPR011043InterPro:IPR017451
KEGG:ath:AT2G18780OMA:RRVRFTCPaxDb:Q84V15Pfam:PF00646
Pfam:PF07734Pfam:Q84V15Pfscan:PS50181PhylomeDB:Q84V15
PIR:E84568PRIDE:Q84V15PRO:PR:Q84V15PROSITE:PS50181
ProteinModelPortal:Q84V15Proteomes:UP000006548RefSeq:NP_179468.2SMART:SM00256
STRING:3702.AT2G18780.1SUPFAM:0047741SUPFAM:SSF50965SUPFAM:SSF81383
TAIR:AT2G18780TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.39945
UniProt:Q84V15
Coordinates (TAIR10) chr2:-:8136983..8138095
Molecular Weight (calculated) 42524.00 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.30
Length 370 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKQSTTMLS DLPKDVAEEV LSKFPVTSLR RVRFTCKKLN TLSKDMSFTR KHIDKEEAKK KQSKEFHVVM MLDFRVSLFS LNLLNPNPIE RLGQLVSLDG
101: GAQVDISNIF HCEGFLLCTT KDISRVVVWN PCVGQTIWIK PRNSFNKWDR YALGYDVMKN HKVLRFVDDG EYGRRHLLCE FEIYSFESDS WEVLDVNPDW
201: EIDFVHRGLS IDGNSYWFAR DKVVPYGGQD PSYFLLCFDF TTERFRPPLP LPFQPYFGDT VALSSVGDNQ IAVLCQRSSS PYTLKIWISS KVEPNAVSWN
301: KLFLKVDMKP LTGNSFSYSG GSFFVDEEKK MAVVLDKNIG GGFDPTRNIA YIIGKEGYFK KVDLGESRHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)