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AT5G46170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.719
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G18380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19908eggNOG:ENOG410IG8TeggNOG:ENOG41119HQEMBL:AB006698
EMBL:AY070105EMBL:AY142657EMBL:CP002688EnsemblPlants:AT5G46170
EnsemblPlants:AT5G46170.1entrez:834659GeneID:834659GO:GO:0010286
Gramene:AT5G46170.1hmmpanther:PTHR31215hmmpanther:PTHR31215:SF2HOGENOM:HOG000238387
InParanoid:Q9FNK5IntAct:Q9FNK5InterPro:IPR001810KEGG:ath:AT5G46170
OMA:FDEIRYLPaxDb:Q9FNK5Pfam:PF12937Pfam:Q9FNK5
PhylomeDB:Q9FNK5PRIDE:Q9FNK5PRO:PR:Q9FNK5ProteinModelPortal:Q9FNK5
Proteomes:UP000006548RefSeq:NP_199429.1SMR:Q9FNK5SUPFAM:SSF81383
TAIR:AT5G46170UniGene:At.7273UniProt:Q9FNK5
Coordinates (TAIR10) chr5:-:18715638..18716825
Molecular Weight (calculated) 42497.70 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.05
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVIIPRSDP PSRIHPEPPQ TLEIDHFDHL PDSILLLVFN KIGDVKALGR CCVVSRRFHS LVPQVDNVVV RVDCVISDDD SSSLSSIKSR SGSSAGSFSA
101: IFRLVVGGIV KPLQALGQFL GTKRSSSSCG GSGSSSSSLS ISGDDDGGEI EQGGVTHHSP TQVLKNFDEI RYLRIELPSG ELGIDDGVLL KWRAEFGSTL
201: DNCVILGASS VIPPNPMRVS QACDTTTVVE APGSGSDDNG SIPESFYTNG GLKLRVVWTI SSLIAASARH YLLQPIIAEH KTLDSLVLTD SDGQGVLCMN
301: RDQLEELRVK PLAASSASKR TLVPALNMRL WYAPTLELPD GTVLKGATLV AIRPSESKKE VSDISWVSSA FEEPYETAAK MLVKRRTYCL EMNSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)