AT3G27770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 158 Blast hits to 157 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10285818..10287474 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36717.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.50 | ||||||||||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLENVLEFT SFDYWFNWRV LLCAIWVIVP MIVSLLVLWK YEDSSVQTQP SLNGNDVLCI DDVWRPCFER IHPGWLLGFR VLGFCFLLAN NIARFANRGW 101: RIYYYYTQWT FTLIAIYFGM GSLLSIYGCL QYKKQGNTGL IADQVGIDAE NGFRSPLIDG DNMVSFEKRK TSGSEALKSY VHLFQIIYQM GAGAAVLTDS 201: IYWTVIFPFL SLQDYEMSFM TVNLHTSNLV LLLIDTFLNR LKFPLFRFSY FILWTGCFVL FQWILHMFIS VGWPYPFLNL SLDMAPVWYL LVALLHLPSY 301: GLFALIVKIK YKLIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)