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AT1G14290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18643979 (2008): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sphingoid base hydroxylase 2
Curator
Summary (TAIR10)
Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.
Computational
Description (TAIR10)
sphingoid base hydroxylase 2 (SBH2); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 1 (TAIR:AT1G69640.1); Has 2314 Blast hits to 2272 proteins in 379 species: Archae - 0; Bacteria - 367; Metazoa - 413; Fungi - 680; Plants - 393; Viruses - 3; Other Eukaryotes - 458 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G14290-MONOMERBioCyc:MetaCyc:AT1G14290-MONOMERBioGrid:23230BRENDA:1.14.13.169
EC:1.14.18.5eggNOG:COG3000eggNOG:KOG0874EMBL:AC012188
EMBL:AF361856EMBL:BT001128EMBL:CP002684EnsemblPlants:AT1G14290
EnsemblPlants:AT1G14290.1entrez:837990GeneID:837990Genevisible:Q9AST3
GO:GO:0005506GO:GO:0005783GO:GO:0005789GO:GO:0005794
GO:GO:0006633GO:GO:0009640GO:GO:0016021GO:GO:0016491
GO:GO:0046520Gramene:AT1G14290.1gramene_pathway:1.14.-.-gramene_pathway:PWY-5129
hmmpanther:PTHR11863hmmpanther:PTHR11863:SF52HOGENOM:HOG000203350InterPro:IPR006694
KEGG:ath:AT1G14290KO:K04713OMA:GIEQKQPPaxDb:Q9AST3
Pfam:PF04116Pfam:Q9AST3PhylomeDB:Q9AST3PIR:A86277
PRIDE:Q9AST3PRO:PR:Q9AST3Proteomes:UP000006548RefSeq:NP_563944.1
STRING:3702.AT1G14290.1TAIR:AT1G14290tair10-symbols:SBH2TMHMM:TMhelix
UniGene:At.28722UniPathway:UPA00786UniProt:Q9AST3
Coordinates (TAIR10) chr1:-:4880307..4881784
Molecular Weight (calculated) 29832.20 Da
IEP (calculated) 8.23
GRAVY (calculated) 0.16
Length 259 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSFVISDEF LGTFVPILVY WVYSGMYICL GSLDKYRLHS KIDEDEKNLV SKSAVVKGVL LQQTLQAIIS VILFKITGSD ADAATTQQFS ILLLARQFII
101: AMLVIDTWQY FIHRYMHLNK FLYKHIHSQH HRLIVPYSYG ALYNHPLEGL LLDTIGGALS FLFSGMSPRT AIFFFSFATI KTVDDHCGLW LPGNPFHIFF
201: SNNSAYHDVH HQLYGTKYNF SQPFFVMWDR ILGTYLPYSL EKRANGGFET RPIKVSKDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)