AT3G02580.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sterol 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sterol 1 (STE1); FUNCTIONS IN: C-5 sterol desaturase activity; INVOLVED IN: sterol biosynthetic process, unidimensional cell growth, brassinosteroid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily protein (TAIR:AT3G02590.1); Has 2349 Blast hits to 2348 proteins in 461 species: Archae - 0; Bacteria - 570; Metazoa - 339; Fungi - 475; Plants - 329; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:547048..548615 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33144.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 281 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAADNAYLMQ FVDETSFYNR IVLSHLLPAN LWEPLPHFLQ TWLRNYLAGT LLYFISGFLW CFYIYYLKIN VYLPKDAIPT IKAMRLQMFV AMKAMPWYTL 101: LPTVSESMIE RGWTKCFASI GEFGWILYFV YIAIYLVFVE FGIYWMHREL HDIKPLYKYL HATHHIYNKQ NTLSPFAGLA FHPVDGILQA VPHVIALFIV 201: PIHFTTHIGL LFMEAIWTAN IHDCIHGNIW PVMGAGYHTI HHTTYKHNYG HYTIWMDWMF GSLRDPLLEE DDNKDSFKKA E |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)