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AT5G17800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 56
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 56 (MYB56); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 105 (TAIR:AT1G69560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AK176193EMBL:AK176277EMBL:AY519627EMBL:CP002688EnsemblPlants:AT5G17800
EnsemblPlants:AT5G17800.1entrez:831648Gene3D:1.10.10.60GeneID:831648GO:GO:0001046GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0045893GO:GO:0051782GO:GO:0071367Gramene:AT5G17800.1HOGENOM:HOG000237764InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT5G17800KO:K09422OMA:KVCSRGHPfam:PF00249Pfscan:PS51294
PhylomeDB:Q6R053PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_197282.1SMART:SM00717SMR:Q6R053STRING:3702.AT5G17800.1
SUPFAM:SSF46689TAIR:AT5G17800tair10-symbols:AtMYB56tair10-symbols:MYB56UniGene:At.7331UniProt:Q6R053
Coordinates (TAIR10) chr5:+:5877247..5879071
Molecular Weight (calculated) 36894.10 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.98
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)