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AT2G33720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.912
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78640.1); Has 94 Blast hits to 88 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J52ReggNOG:ENOG4111D7CEMBL:AY144103EMBL:AY924757
EMBL:CP002685EMBL:U78721EnsemblPlants:AT2G33720EnsemblPlants:AT2G33720.1
entrez:817937Gene3D:2.40.330.10GeneID:817937Genevisible:O23659
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT2G33720.1hmmpanther:PTHR34269HOGENOM:HOG000155171InParanoid:O23659
InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT2G33720OMA:WDRSESK
PaxDb:O23659Pfam:O23659PhylomeDB:O23659PIR:G84748
PRIDE:O23659PRO:PR:O23659ProteinModelPortal:O23659Proteomes:UP000006548
RefSeq:NP_180928.1SMART:SM01019SUPFAM:SSF101936TAIR:AT2G33720
UniGene:At.37893UniGene:At.68923UniProt:O23659
Coordinates (TAIR10) chr2:+:14263776..14264989
Molecular Weight (calculated) 37422.60 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.45
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMPPPFSAS KTQYLFHDES SENSKKSLVS TTLSLSSCEN PNKRKMNSDE VLNISCIPRD YKLTQVERKI ARMRNLSYQE KAEDEWYGVS TELTLFKDPW
101: IIKKVFHFAS VLDMAPNSVS NTHCLLDTES PENAEESLVS LDLCFYDKTW PHDPNVAYNK PTSEEAINLA WMRTMSKRAR KEEEKYYVST ELTLLTVADP
201: WTLKMAMTKS SIGNLYRLVL KASFVDIHIL RYLPLDDQMM VKEDSGLAVE VYDHDTDSVH NLALKKWAKS SSFVLVSGWR KCFVDRRGLQ VGDVIGMYWD
301: RSESKLHFCV LSRSETMDSA PLPPSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)