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AT2G24700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G00260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT8HeggNOG:ENOG4110837EMBL:AC007266EMBL:BX819051
EMBL:CP002685EnsemblPlants:AT2G24700EnsemblPlants:AT2G24700.1entrez:817006
Gene3D:2.40.330.10GeneID:817006GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT2G24700.1hmmpanther:PTHR31674
hmmpanther:PTHR31674:SF5HOGENOM:HOG000154088InParanoid:P0DH85InterPro:IPR003340
InterPro:IPR015300iPTMnet:P0DH85KEGG:ath:AT2G24700OMA:FCEVNGV
PaxDb:P0DH85Pfam:P0DH85Pfam:PF02362Pfscan:PS50863
PhylomeDB:P0DH85PIR:H84639PRIDE:P0DH85PRO:PR:P0DH85
PROSITE:PS50863ProteinModelPortal:P0DH85Proteomes:UP000006548RefSeq:NP_180046.2
SMART:SM01019SMR:P0DH85STRING:3702.AT2G24700.1SUPFAM:SSF101936
TAIR:AT2G24700UniGene:At.50095UniProt:P0DH85
Coordinates (TAIR10) chr2:-:10513049..10515288
Molecular Weight (calculated) 63261.90 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.44
Length 555 amino acids
Sequence (TAIR10)
(BLAST)
001: MANPLLYSPI NPQFFQPLLP GFTNHLDIPV AFFLKYLVGT NVGKTAELRS DASEMTWKVK IDGRRLSNGW EDFTIAHDLR VGDIVVFRQE GELVFHVTAL
101: GPSCCEIQYG EDTLEEDKIE KLCGTENVSS KKKSLKREAE SAPDNSLDSC FVATVTGSNL KRDTLYIPKE FALSNGLMNK YQIVLMNEEG ESWKIDLRRE
201: AYNYGRFYMR RGWRSFCIAN GKKPGDVFAF KLVKNEETPM IQLFPMTIED LDKLQSLPRH KIRKTEAAPS SPDLSSFVAT VTASNLSRDR LYLPKTFIMS
301: NGLLKKFQMC LMNEEGESWT IDVKHEAHTG RFLTIRGWRR FCVANGKKPG DLLKFKLVHN EETPVLQLLP LNSEDLHKLN PSNDTRHGQS LKVTKKEFLG
401: MEATENEFLG EEVYCNDSFK ASEKDTLPFA EPINEDIRQG QCSQTIKQEY VSTEEKNSTS QNRFVTLTLT HSSKLNLPFE FMKRNGIKKA GKITMVDRYD
501: AKWRTSLLMD KIGTMSLGRG SKGFCEVNGV EMNESFILEL IWEDTVPLLK FCSKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)