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AT3G27770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.931
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 158 Blast hits to 157 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAPCeggNOG:ENOG41119NDEMBL:AK118896EMBL:AK175551EMBL:AK175558EMBL:AK176385EMBL:AK176403
EMBL:AK176435EMBL:AK176719EMBL:AK221360EMBL:AK222228EMBL:AK222232EMBL:AK222233EMBL:AK230261
EMBL:AY060578EMBL:CP002686EnsemblPlants:AT3G27770EnsemblPlants:AT3G27770.1entrez:822398ExpressionAtlas:Q8W4R6GeneID:822398
GO:GO:0016021Gramene:AT3G27770.1hmmpanther:PTHR12242hmmpanther:PTHR12242:SF8OMA:MTVNMHTPhylomeDB:Q8W4R6Proteomes:UP000006548
RefSeq:NP_566825.1STRING:3702.AT3G27770.1TAIR:AT3G27770TMHMM:TMhelixUniGene:At.27365UniGene:At.70371UniProt:Q8W4R6
Coordinates (TAIR10) chr3:-:10285818..10287474
Molecular Weight (calculated) 36717.20 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.50
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLENVLEFT SFDYWFNWRV LLCAIWVIVP MIVSLLVLWK YEDSSVQTQP SLNGNDVLCI DDVWRPCFER IHPGWLLGFR VLGFCFLLAN NIARFANRGW
101: RIYYYYTQWT FTLIAIYFGM GSLLSIYGCL QYKKQGNTGL IADQVGIDAE NGFRSPLIDG DNMVSFEKRK TSGSEALKSY VHLFQIIYQM GAGAAVLTDS
201: IYWTVIFPFL SLQDYEMSFM TVNLHTSNLV LLLIDTFLNR LKFPLFRFSY FILWTGCFVL FQWILHMFIS VGWPYPFLNL SLDMAPVWYL LVALLHLPSY
301: GLFALIVKIK YKLIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)