suba logo
AT2G17360.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S4 (RPS4A) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1386 Blast hits to 1386 proteins in 444 species: Archae - 258; Bacteria - 2; Metazoa - 428; Fungi - 183; Plants - 271; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Protein Annotations
BioGrid:1600eggNOG:COG1471eggNOG:KOG0378EMBL:AF370469EMBL:AY035131EMBL:AY062983EMBL:AY064625
EMBL:AY084230EMBL:CP002685EnsemblPlants:AT2G17360EnsemblPlants:AT2G17360.1entrez:816243ExpressionAtlas:Q93VH9GeneID:816243
Genevisible:Q93VH9GO:GO:0003735GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0006412GO:GO:0009507
GO:GO:0019843GO:GO:0022627HAMAP:MF_00485hmmpanther:PTHR11581HOGENOM:HOG000231325InParanoid:Q93VH9IntAct:Q93VH9
InterPro:IPR000876InterPro:IPR002942InterPro:IPR005824InterPro:IPR013843InterPro:IPR013845InterPro:IPR018199InterPro:IPR032277
iPTMnet:Q93VH9ncoils:CoilOMA:KVRTDNTPANTHER:PTHR11581PaxDb:Q93VH9Pfam:PF00467Pfam:PF00900
Pfam:PF01479Pfam:PF08071Pfam:PF16121Pfam:Q93VH9Pfscan:PS50889PhylomeDB:Q93VH9PIR:C84551
PIRSF:PIRSF002116PRIDE:Q93VH9PRO:PR:Q93VH9ProDom:PD002667PROSITE:PS00528PROSITE:PS50889ProteinModelPortal:Q93VH9
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_565414.1scanprosite:PS00528SMART:SM00739SMR:Q93VH9STRING:3702.AT2G17360.1
TAIR:AT2G17360UniGene:At.25091UniProt:Q93VH9
Coordinates (TAIR10) chr2:+:7546598..7548138
Molecular Weight (calculated) 29804.60 Da
IEP (calculated) 10.85
GRAVY (calculated) -0.53
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)